HL_5AJ0_004

3D structure

PDB id

5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo electron microscopy of actively translating human polysomes (POST state).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CCCGCGGGGCG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_17244.1

Basepair signature

cWW-tWH-R-tWW-R-R-R-R

Number of instances in this motif group

1

Unit IDs

5AJ0|1|A2|C|129
5AJ0|1|A2|C|130
5AJ0|1|A2|C|131
5AJ0|1|A2|G|132
5AJ0|1|A2|C|133
5AJ0|1|A2|G|134
5AJ0|1|A2|G|135
5AJ0|1|A2|G|136
5AJ0|1|A2|G|137
5AJ0|1|A2|C|138
5AJ0|1|A2|G|139

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AN

60S ribosomal protein L15

Chain Ah

60S ribosomal protein L35

Chain Aj

60S ribosomal protein L37