5AJ0 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
3D | Loop id | Location | Annotation; motif group | Mapped info |
---|---|---|---|---|
HL_5AJ0_001 | 1/A2/37:44 | No text annotation Not in a motif group | homologous HL_5TBW_001 HL_06192.4 | |
HL_5AJ0_002 | 1/A2/68:73 | No text annotation Not in a motif group | homologous HL_8C3A_002 HL_56241.3 | |
HL_5AJ0_003 | 1/A2/89:95 | No text annotation Not in a motif group | homologous HL_5TBW_003 HL_67216.8 | |
HL_5AJ0_004 | 1/A2/129:139 | No text annotation Not in a motif group | ||
HL_5AJ0_005 | 1/A2/199:208 | No text annotation Not in a motif group | geometric HL_2ZZM_002 HL_74284.1 | |
HL_5AJ0_006 | 1/A2/218:222 | No text annotation Not in a motif group | homologous HL_5TBW_006 HL_33074.1 | |
HL_5AJ0_007 | 1/A2/283:292 | No text annotation Not in a motif group | homologous HL_8C3A_008 HL_71554.2 | |
HL_5AJ0_008 | 1/A2/308:317 | No text annotation Not in a motif group | homologous HL_8C3A_009 HL_12078.6 | |
HL_5AJ0_009 | 1/A2/362:367 | GNRA Not in a motif group | homologous HL_8C3A_010 HL_85603.2 | |
HL_5AJ0_010 | 1/A2/387:392 | GNRA Not in a motif group | homologous HL_8C3A_011 HL_85603.2 | |
HL_5AJ0_014 | 1/A2/1161:1166 | No text annotation Not in a motif group | geometric HL_1GID_008 HL_36514.1 | |
HL_5AJ0_016 | 1/A2/1300:1309 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_5TBW_014 HL_23932.1 | |
HL_5AJ0_123 | 1/A2/1347:1356 | No text annotation Not in a motif group | ||
HL_5AJ0_018 | 1/A2/1372:1377 | GNRA Not in a motif group | homologous HL_5TBW_016 HL_85603.2 | |
HL_5AJ0_124 | 1/A2/1388:1395 | No text annotation Not in a motif group | ||
HL_5AJ0_019 | 1/A2/1389:1394 | No text annotation Not in a motif group | ||
HL_5AJ0_125 | 1/A2/1413:1436 | No text annotation Not in a motif group | ||
HL_5AJ0_020 | 1/A2/1417:1432 | No text annotation Not in a motif group | ||
HL_5AJ0_021 | 1/A2/1461:1468 | No text annotation Not in a motif group | geometric HL_6VMY_004 HL_91058.2 | |
HL_5AJ0_022 | 1/A2/1543:1548 | GNRA Not in a motif group | homologous HL_5TBW_019 HL_85603.2 | |
HL_5AJ0_023 | 1/A2/1575:1584 | No text annotation Not in a motif group | homologous HL_5TBW_020 HL_39334.8 | |
HL_5AJ0_024 | 1/A2/1609:1617 | No text annotation Not in a motif group | homologous HL_5TBW_021 HL_33817.1 | |
HL_5AJ0_025 | 1/A2/1657:1662 | No text annotation Not in a motif group | homologous HL_8C3A_022 HL_96598.3 | |
HL_5AJ0_026 | 1/A2/1745:1751 | GNRA variation Not in a motif group | geometric HL_5VSU_001 HL_85603.2 | |
HL_5AJ0_027 | 1/A2/1798:1805 | No text annotation Not in a motif group | homologous HL_5TBW_024 HL_71554.2 | |
HL_5AJ0_028 | 1/A2/1845:1851 | GNRA Not in a motif group | homologous HL_8C3A_025 HL_85603.2 | |
HL_5AJ0_029 | 1/A2/1867:1874 | No text annotation Not in a motif group | homologous HL_8C3A_026 HL_28421.1 | |
HL_5AJ0_030 | 1/A2/1954:1974 | No text annotation Not in a motif group | ||
HL_5AJ0_031 | 1/A2/1986:1995 | No text annotation Not in a motif group | geometric HL_5TBW_028 HL_39947.1 | |
HL_5AJ0_033 | 1/A2/2296:2301 | GNRA Not in a motif group | homologous HL_5TBW_030 HL_85603.2 | |
HL_5AJ0_034 | 1/A2/2355:2363 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_8C3A_031 HL_23932.1 | |
HL_5AJ0_035 | 1/A2/2399:2405 | No text annotation Not in a motif group | homologous HL_5TBW_032 HL_42228.1 | |
HL_5AJ0_036 | 1/A2/2437:2442 | GNRA related Not in a motif group | homologous HL_5TBW_033 HL_76539.7 | |
HL_5AJ0_037 | 1/A2/2466:2470 | No text annotation Not in a motif group | geometric HL_5TBW_044 HL_09829.2 | |
HL_5AJ0_038 | 1/A2/2502:2511 | No text annotation Not in a motif group | homologous HL_5TBW_035 HL_38060.1 | |
HL_5AJ0_039 | 1/A2/2540:2545 | GNRA Not in a motif group | geometric HL_5F9F_003 HL_85603.2 | |
HL_5AJ0_040 | 1/A2/2557:2562 | GNRA Not in a motif group | homologous HL_5TBW_036 HL_85603.2 | |
HL_5AJ0_041 | 1/A2/2603:2611 | No text annotation Not in a motif group | homologous HL_5TBW_037 HL_01927.1 | |
HL_5AJ0_042 | 1/A2/2643:2649 | No text annotation Not in a motif group | homologous HL_8C3A_038 HL_74284.1 | |
HL_5AJ0_126 | 1/A2/2683:2691 | No text annotation Not in a motif group | homologous HL_8C3A_039 HL_64107.1 | |
HL_5AJ0_044 | 1/A2/2717:2721 | No text annotation Not in a motif group | homologous HL_8C3A_040 HL_52105.1 | |
HL_5AJ0_045 | 1/A2/2771:2778 | No text annotation Not in a motif group | homologous HL_5TBW_041 HL_28421.1 | |
HL_5AJ0_046 | 1/A2/2789:2795 | No text annotation Not in a motif group | homologous HL_8C3A_042 HL_58029.1 | |
HL_5AJ0_047 | 1/A2/2851:2856 | UNCG Not in a motif group | geometric HL_1KUQ_001 HL_29960.2 | |
HL_5AJ0_049 | 1/A2/3585:3589 | No text annotation Not in a motif group | homologous HL_8C3A_045 HL_55359.1 | |
HL_5AJ0_050 | 1/A2/3610:3620 | No text annotation Not in a motif group | homologous HL_5TBW_046 HL_43613.6 | |
HL_5AJ0_051 | 1/A2/3639:3645 | GNRA Not in a motif group | homologous HL_8C3A_047 HL_85603.2 | |
HL_5AJ0_052 | 1/A2/3695:3700 | GNRA Not in a motif group | homologous HL_5TBW_048 HL_85603.2 | |
HL_5AJ0_127 | 1/A2/3726:3741 | No text annotation Not in a motif group | ||
HL_5AJ0_053 | 1/A2/3728:3738 | No text annotation Not in a motif group | homologous HL_5TBW_049 HL_84702.1 | |
HL_5AJ0_054 | 1/A2/3767:3775 | No text annotation Not in a motif group | homologous HL_8C3A_050 HL_51824.2 | |
HL_5AJ0_055 | 1/A2/3844:3853 | No text annotation Not in a motif group | homologous HL_8C3A_051 HL_90642.7 | |
HL_5AJ0_056 | 1/A2/4072:4076 | No text annotation Not in a motif group | geometric HL_4YAZ_004 HL_44926.1 | |
HL_5AJ0_057 | 1/A2/4104:4111 | No text annotation Not in a motif group | geometric HL_4YAZ_004 HL_44926.1 | |
HL_5AJ0_058 | 1/A2/4155:4163 | No text annotation Not in a motif group | homologous HL_5TBW_054 HL_47383.1 | |
HL_5AJ0_059 | 1/A2/4172:4184 | No text annotation Not in a motif group | homologous HL_5TBW_055 HL_19870.8 | |
HL_5AJ0_060 | 1/A2/4212:4220 | No text annotation Not in a motif group | homologous HL_5TBW_056 HL_72777.1 | |
HL_5AJ0_061 | 1/A2/4232:4239 | No text annotation Not in a motif group | homologous HL_5TBW_057 HL_12078.6 | |
HL_5AJ0_062 | 1/A2/4263:4271 | No text annotation Not in a motif group | homologous HL_8C3A_059 HL_21392.1 | |
HL_5AJ0_063 | 1/A2/4283:4288 | GNRA Not in a motif group | homologous HL_5TBW_059 HL_85603.2 | |
HL_5AJ0_064 | 1/A2/4314:4324 | No text annotation Not in a motif group | geometric HL_2ZZM_002 HL_74284.1 | |
HL_5AJ0_065 | 1/A2/4379:4387 | No text annotation Not in a motif group | homologous HL_5TBW_061 HL_06192.4 | |
HL_5AJ0_066 | 1/A2/4436:4443 | No text annotation Not in a motif group | homologous HL_5TBW_062 HL_78499.1 | |
HL_5AJ0_067 | 1/A2/4459:4465 | No text annotation Not in a motif group | homologous HL_8C3A_064 HL_22584.2 | |
HL_5AJ0_068 | 1/A2/4502:4507 | GNRA Not in a motif group | homologous HL_5TBW_064 HL_85603.2 | |
HL_5AJ0_069 | 1/A2/4565:4570 | GNRA Not in a motif group | geometric HL_2OIU_001 HL_85603.2 | |
HL_5AJ0_070 | 1/A2/4608:4613 | Ribsomal LSU H95 Not in a motif group | homologous HL_5TBW_066 HL_00828.1 | |
HL_5AJ0_071 | 1/A2/4650:4664 | No text annotation Not in a motif group | homologous HL_8C3A_068 HL_56677.8 | |
HL_5AJ0_072 | 1/A2/4865:4872 | No text annotation Not in a motif group | ||
HL_5AJ0_073 | 1/A2/4933:4941 | No text annotation Not in a motif group | geometric HL_5TBW_070 HL_64690.3 | |
HL_5AJ0_074 | 1/A2/4979:4986 | No text annotation Not in a motif group | geometric HL_5NFV_001 HL_76539.7 | |
HL_5AJ0_075 | 1/A3/55:62 | No text annotation Not in a motif group | geometric HL_4P5J_004 HL_86769.3 | |
HL_5AJ0_076 | 1/A3/68:90 | No text annotation Not in a motif group | homologous HL_8C3A_075 NA | |
HL_5AJ0_077 | 1/A3/107:112 | No text annotation Not in a motif group | homologous HL_5TBW_075 HL_41152.1 | |
HL_5AJ0_078 | 1/A3/120:130 | No text annotation Not in a motif group | geometric HL_2Y9H_004 HL_32095.1 | |
HL_5AJ0_128 | 1/A4/32:45 | No text annotation Not in a motif group | homologous HL_8C3A_228 HL_81622.1 | |
HL_5AJ0_079 | 1/A4/36:41 | No text annotation Not in a motif group | homologous HL_5J7L_203 HL_83767.2 | |
HL_5AJ0_080 | 1/A4/86:91 | GNRA Not in a motif group | homologous HL_5TBW_186 HL_85603.2 | |
HL_5AJ0_081 | 1/B1/7:17 | No text annotation Not in a motif group | homologous HL_4V88_186 HL_89881.2 | |
HL_5AJ0_082 | 1/B1/69:80 | No text annotation Not in a motif group | ||
HL_5AJ0_083 | 1/B1/156:162 | Other HL Not in a motif group | homologous HL_4V88_188 HL_76539.7 | |
HL_5AJ0_084 | 1/B1/197:202 | GNRA Not in a motif group | geometric HL_1KXK_001 HL_85603.2 | |
HL_5AJ0_086 | 1/B1/288:295 | T-loop with 1 bulged base Not in a motif group | homologous HL_4V88_191 HL_56241.3 | |
HL_5AJ0_087 | 1/B1/322:329 | No text annotation Not in a motif group | ||
HL_5AJ0_088 | 1/B1/377:387 | No text annotation Not in a motif group | geometric HL_1KH6_003 HL_36032.1 | |
HL_5AJ0_089 | 1/B1/416:421 | No text annotation Not in a motif group | homologous HL_4V88_194 HL_50142.2 | |
HL_5AJ0_090 | 1/B1/441:452 | No text annotation Not in a motif group | homologous HL_4V88_195 HL_84288.1 | |
HL_5AJ0_091 | 1/B1/462:467 | UNCG Not in a motif group | homologous HL_4V88_196 HL_29960.2 | |
HL_5AJ0_092 | 1/B1/498:504 | No text annotation Not in a motif group | homologous HL_4V88_197 HL_60707.1 | |
HL_5AJ0_093 | 1/B1/539:544 | No text annotation Not in a motif group | geometric HL_5NFV_001 HL_76539.7 | |
HL_5AJ0_094 | 1/B1/566:584 | No text annotation Not in a motif group | ||
HL_5AJ0_095 | 1/B1/618:623 | GNRA variation Not in a motif group | homologous HL_4V88_200 HL_64107.1 | |
HL_5AJ0_098 | 1/B1/820:828 | No text annotation Not in a motif group | homologous HL_4V88_203 HL_46766.2 | |
HL_5AJ0_099 | 1/B1/833:841 | No text annotation Not in a motif group | ||
HL_5AJ0_100 | 1/B1/885:901 | No text annotation Not in a motif group | homologous HL_4V88_205 HL_96598.3 | |
HL_5AJ0_101 | 1/B1/957:966 | No text annotation Not in a motif group | homologous HL_4V88_206 HL_12326.2 | |
HL_5AJ0_102 | 1/B1/994:999 | GNRA Not in a motif group | homologous HL_4V88_207 HL_29031.1 | |
HL_5AJ0_103 | 1/B1/1054:1064 | No text annotation Not in a motif group | homologous HL_4V88_208 HL_12326.2 | |
HL_5AJ0_104 | 1/B1/1112:1121 | No text annotation Not in a motif group | ||
HL_5AJ0_105 | 1/B1/1141:1146 | GNRA Not in a motif group | homologous HL_4V88_210 HL_85603.2 | |
HL_5AJ0_106 | 1/B1/1178:1183 | GNRA Not in a motif group | homologous HL_4V88_211 HL_85603.2 | |
HL_5AJ0_107 | 1/B1/1245:1254 | No text annotation Not in a motif group | homologous HL_8P9A_215 NA | |
HL_5AJ0_108 | 1/B1/1295:1304 | No text annotation Not in a motif group | homologous HL_4V88_213 HL_66836.1 | |
HL_5AJ0_109 | 1/B1/1353:1358 | GNRA Not in a motif group | homologous HL_4V88_214 HL_85603.2 | |
HL_5AJ0_110 | 1/B1/1366:1373 | No text annotation Not in a motif group | homologous HL_4V88_215 HL_71554.2 | |
HL_5AJ0_111 | 1/B1/1415:1422 | No text annotation Not in a motif group | geometric HL_2ZZM_002 HL_74284.1 | |
HL_5AJ0_112 | 1/B1/1460:1466 | No text annotation Not in a motif group | geometric HL_5U3G_001 HL_74284.1 | |
HL_5AJ0_113 | 1/B1/1565:1570 | GNRA Not in a motif group | homologous HL_4V88_218 HL_85603.2 | |
HL_5AJ0_129 | 1/B1/1614:1625 | No text annotation Not in a motif group | homologous HL_8P9A_222 NA | |
HL_5AJ0_115 | 1/B1/1658:1666 | No text annotation Not in a motif group | homologous HL_4V88_220 HL_01927.1 | |
HL_5AJ0_116 | 1/B1/1847:1852 | GNRA related Not in a motif group | homologous HL_4V88_222 HL_29031.1 | |
HL_5AJ0_117 | 1/Bv/13:22 | No text annotation Not in a motif group | homologous HL_5HR6_001 HL_78347.1 | |
HL_5AJ0_118 | 1/Bv/31:39 | tRNA anticodon loop Not in a motif group | homologous HL_4TUE_034 HL_36427.1 | |
HL_5AJ0_119 | 1/Bv/53:61 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_4LCK_003 HL_15422.1 | |
HL_5AJ0_120 | 1/Bw/13:22 | No text annotation Not in a motif group | homologous HL_4LCK_001 NA | |
HL_5AJ0_121 | 1/Bw/31:39 | tRNA anticodon loop Not in a motif group | homologous HL_4V90_033 HL_36427.1 | |
HL_5AJ0_130 | 1/Bw/52:62 | No text annotation Not in a motif group | homologous HL_4TUE_218 HL_23827.1 | |
HL_5AJ0_122 | 1/Bw/53:61 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_3WFS_003 HL_15422.1 |
Problematic loops
# | loop id | Problem | Sequence |
---|---|---|---|
HL_5AJ0_011 | No text annotation | ||
HL_5AJ0_012 | No text annotation | ||
HL_5AJ0_013 | No text annotation | ||
HL_5AJ0_015 | No text annotation | ||
HL_5AJ0_017 | No text annotation | ||
HL_5AJ0_032 | No text annotation | ||
HL_5AJ0_043 | No text annotation | ||
HL_5AJ0_048 | No text annotation | ||
HL_5AJ0_085 | No text annotation | ||
HL_5AJ0_096 | No text annotation | ||
HL_5AJ0_097 | No text annotation | ||
HL_5AJ0_114 | No text annotation |
Valid loops
3D | Loop id | Location | Annotation; motif group | Mapped info |
---|---|---|---|---|
IL_5AJ0_001 | 1/A2/6:7, 1/A3/149:151 | Single bulged C Not in a motif group | homologous IL_8C3A_002 IL_61258.13 | |
IL_5AJ0_002 | 1/A2/12:14, 1/A3/143:144 | Single bulged U Not in a motif group | homologous IL_8C3A_003 IL_83039.18 | |
IL_5AJ0_003 | 1/A2/16:18, 1/A3/139:141 | Isolated cWH basepair Not in a motif group | geometric IL_3R1C_017 IL_66171.1 | |
IL_5AJ0_004 | 1/A2/26:27, 1/A2/55:57 | No text annotation Not in a motif group | homologous IL_8C3A_004 IL_11389.1 | |
IL_5AJ0_005 | 1/A2/30:37, 1/A2/44:52 | No text annotation Not in a motif group | homologous IL_8C3A_005 IL_35728.2 | |
IL_5AJ0_006 | 1/A2/81:88, 1/A2/96:102 | No text annotation Not in a motif group | homologous IL_8C3A_006 IL_88613.1 | |
IL_5AJ0_007 | 1/A2/118:124, 1/A2/143:151 | No text annotation Not in a motif group | ||
IL_5AJ0_009 | 1/A2/127:129, 1/A2/139:140 | Single stack bend Not in a motif group | geometric IL_5TBW_375 IL_67809.1 | |
IL_5AJ0_010 | 1/A2/158:160, 1/A2/267:269 | No text annotation Not in a motif group | geometric IL_5TBW_079 IL_74602.1 | |
IL_5AJ0_011 | 1/A2/161:164, 1/A2/263:266 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_5EW4_002 IL_73915.1 | |
IL_5AJ0_012 | 1/A2/165:167, 1/A2/261:262 | No text annotation Not in a motif group | ||
IL_5AJ0_285 | 1/A2/165:171, 1/A2/257:262 | No text annotation Not in a motif group | ||
IL_5AJ0_013 | 1/A2/167:171, 1/A2/257:261 | No text annotation Not in a motif group | ||
IL_5AJ0_014 | 1/A2/171:173, 1/A2/256:257 | Single stack bend Not in a motif group | geometric IL_5J7L_032 IL_67809.1 | |
IL_5AJ0_015 | 1/A2/173:175, 1/A2/253:256 | No text annotation Not in a motif group | ||
IL_5AJ0_016 | 1/A2/175:185, 1/A2/248:253 | No text annotation Not in a motif group | ||
IL_5AJ0_017 | 1/A2/342:344, 1/A3/25:26 | Single bulged A Not in a motif group | homologous IL_5TBW_013 IL_37497.8 | |
IL_5AJ0_018 | 1/A2/409:415, 1/A3/13:19 | Triple sheared with non-canonical cWW Not in a motif group | homologous IL_8C3A_016 IL_66414.7 | |
IL_5AJ0_019 | 1/A2/437:440, 1/A2/1283:1287 | No text annotation Not in a motif group | ||
IL_5AJ0_020 | 1/A2/450:453, 1/A2/689:692 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_5EW4_002 IL_73915.1 | |
IL_5AJ0_021 | 1/A2/454:456, 1/A2/686:688 | Isolated non-canonical cWW Not in a motif group | geometric IL_5TBW_027 IL_64928.1 | |
IL_5AJ0_022 | 1/A2/456:460, 1/A2/682:686 | No text annotation Not in a motif group | geometric IL_5TBW_121 NA | |
IL_5AJ0_286 | 1/A2/460:466, 1/A2/676:682 | No text annotation Not in a motif group | ||
IL_5AJ0_024 | 1/A2/467:469, 1/A2/673:675 | No text annotation Not in a motif group | geometric IL_4V9F_105 IL_74602.1 | |
IL_5AJ0_287 | 1/A2/467:470, 1/A2/671:675 | No text annotation Not in a motif group | ||
IL_5AJ0_025 | 1/A2/469:470, 1/A2/671:673 | Single stack bend Not in a motif group | geometric IL_5J7L_032 IL_67809.1 | |
IL_5AJ0_026 | 1/A2/470:472, 1/A2/670:671 | Single stack bend Not in a motif group | geometric IL_4C7O_002 IL_67809.1 | |
IL_5AJ0_288 | 1/A2/470:475, 1/A2/667:671 | No text annotation Not in a motif group | ||
IL_5AJ0_027 | 1/A2/472:475, 1/A2/667:670 | Self complementary Not in a motif group | geometric IL_3NDB_001 NA | |
IL_5AJ0_028 | 1/A2/475:478, 1/A2/665:667 | No text annotation Not in a motif group | geometric IL_4V9F_053 IL_30659.1 | |
IL_5AJ0_289 | 1/A2/475:481, 1/A2/663:667 | No text annotation Not in a motif group | ||
IL_5AJ0_029 | 1/A2/478:481, 1/A2/663:665 | Isolated non-canonical cWW Not in a motif group | geometric IL_4P3T_006 IL_64928.1 | |
IL_5AJ0_030 | 1/A2/481:485, 1/A2/656:663 | No text annotation Not in a motif group | ||
IL_5AJ0_031 | 1/A2/486:489, 1/A2/653:655 | Other IL Not in a motif group | geometric IL_5TBW_064 IL_59221.1 | |
IL_5AJ0_032 | 1/A2/489:490, 1/A2/651:653 | Single stack bend Not in a motif group | geometric IL_4C7O_002 IL_67809.1 | |
IL_5AJ0_033 | 1/A2/491:493, 1/A2/649:650 | Major groove platform Not in a motif group | geometric IL_5Y85_005 IL_27635.5 | |
IL_5AJ0_034 | 1/A2/493:498, 1/A2/648:649 | Single stack bend Not in a motif group | geometric IL_4V9F_005 IL_11389.1 | |
IL_5AJ0_035 | 1/A2/502:504, 1/A2/643:644 | Single bulged A Not in a motif group | geometric IL_2VPL_002 IL_37497.8 | |
IL_5AJ0_290 | 1/A2/506:509, 1/A2/640:641 | Multiple bulged bases Not in a motif group | geometric IL_4YAZ_008 IL_99483.1 | |
IL_5AJ0_037 | 1/A2/514:515, 1/A2/632:635 | Single stack bend Not in a motif group | geometric IL_4V9F_005 IL_11389.1 | |
IL_5AJ0_038 | 1/A2/699:700, 1/A2/1270:1272 | Single bulged G Not in a motif group | geometric IL_4LFB_036 IL_00225.5 | |
IL_5AJ0_039 | 1/A2/713:715, 1/A2/929:933 | No text annotation Not in a motif group | ||
IL_5AJ0_040 | 1/A2/717:726, 1/A2/915:927 | No text annotation Not in a motif group | ||
IL_5AJ0_041 | 1/A2/727:729, 1/A2/913:914 | No text annotation Not in a motif group | ||
IL_5AJ0_042 | 1/A2/731:733, 1/A2/909:911 | Isolated non-canonical cWW Not in a motif group | geometric IL_2O3V_001 IL_64928.1 | |
IL_5AJ0_043 | 1/A2/733:736, 1/A2/907:909 | Other IL Not in a motif group | geometric IL_5TBW_064 IL_59221.1 | |
IL_5AJ0_044 | 1/A2/736:741, 1/A2/899:907 | No text annotation Not in a motif group | ||
IL_5AJ0_045 | 1/A2/741:743, 1/A2/898:899 | Single stack bend Not in a motif group | geometric IL_4C7O_002 IL_67809.1 | |
IL_5AJ0_046 | 1/A2/1059:1063, 1/A2/1202:1218 | No text annotation Not in a motif group | ||
IL_5AJ0_047 | 1/A2/1064:1067, 1/A2/1195:1201 | No text annotation Not in a motif group | ||
IL_5AJ0_291 | 1/A2/1064:1068, 1/A2/1194:1201 | No text annotation Not in a motif group | ||
IL_5AJ0_048 | 1/A2/1068:1072, 1/A2/1189:1194 | No text annotation Not in a motif group | geometric IL_5TBW_121 NA | |
IL_5AJ0_049 | 1/A2/1072:1077, 1/A2/1184:1189 | Tandem non-canonical cWW pairs with near WC pairs Not in a motif group | geometric IL_4EYA_005 IL_59344.1 | |
IL_5AJ0_292 | 1/A2/1072:1078, 1/A2/1184:1189 | No text annotation Not in a motif group | ||
IL_5AJ0_293 | 1/A2/1078:1079, 1/A2/1182:1184 | Single stack bend Not in a motif group | geometric IL_7KGA_003 IL_67809.1 | |
IL_5AJ0_052 | 1/A2/1156:1158, 1/A2/1169:1171 | Isolated cWH basepair Not in a motif group | geometric IL_3R1C_032 NA | |
IL_5AJ0_053 | 1/A2/1340:1343, 1/A2/1362:1365 | No text annotation Not in a motif group | ||
IL_5AJ0_294 | 1/A2/1340:1344, 1/A2/1359:1365 | No text annotation Not in a motif group | ||
IL_5AJ0_054 | 1/A2/1343:1344, 1/A2/1359:1362 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | geometric IL_1NBS_009 IL_38186.2 | |
IL_5AJ0_055 | 1/A2/1408:1412, 1/A2/1437:1442 | Triple sheared related Not in a motif group | geometric IL_4V9F_018 IL_64879.2 | |
IL_5AJ0_056 | 1/A2/1413:1417, 1/A2/1432:1436 | Triple sheared Not in a motif group | geometric IL_7A0S_056 IL_08257.1 | |
IL_5AJ0_057 | 1/A2/1449:1450, 1/A2/1478:1480 | Single bulged A Not in a motif group | homologous IL_8C3A_026 IL_37497.8 | |
IL_5AJ0_058 | 1/A2/1452:1454, 1/A2/1474:1476 | Isolated non-canonical cWW Not in a motif group | geometric IL_5TBW_110 IL_64928.1 | |
IL_5AJ0_059 | 1/A2/1456:1458, 1/A2/1471:1472 | Single stack bend Not in a motif group | geometric IL_6FZ0_001 IL_11389.1 | |
IL_5AJ0_060 | 1/A2/1502:1504, 1/A2/1637:1639 | Isolated non-canonical cWW Not in a motif group | geometric IL_5TBW_027 IL_64928.1 | |
IL_5AJ0_061 | 1/A2/1504:1508, 1/A2/1630:1637 | No text annotation Not in a motif group | homologous IL_8C3A_030 IL_17470.7 | |
IL_5AJ0_295 | 1/A2/1532:1533, 1/A2/1558:1560 | Single bulged G Not in a motif group | homologous IL_8C3A_032 IL_00225.5 | |
IL_5AJ0_063 | 1/A2/1533:1537, 1/A2/1554:1558 | Triple sheared Not in a motif group | homologous IL_5TBW_030 IL_95716.1 | |
IL_5AJ0_064 | 1/A2/1568:1571, 1/A2/1587:1589 | No text annotation Not in a motif group | homologous IL_8C3A_034 IL_05564.4 | |
IL_5AJ0_065 | 1/A2/1572:1574, 1/A2/1585:1586 | Single bulged U Not in a motif group | homologous IL_8C3A_035 IL_83039.18 | |
IL_5AJ0_066 | 1/A2/1606:1608, 1/A2/1618:1622 | Multiple bulged bases Not in a motif group | geometric IL_5TBW_033 IL_90991.8 | |
IL_5AJ0_067 | 1/A2/1653:1655, 1/A2/1664:1666 | Isolated non-canonical cWW Not in a motif group | homologous IL_5TBW_034 IL_64928.1 | |
IL_5AJ0_068 | 1/A2/1668:1670, 1/A2/1829:1832 | No text annotation Not in a motif group | ||
IL_5AJ0_070 | 1/A2/1705:1707, 1/A2/1819:1820 | Single bulged G Not in a motif group | homologous IL_8C3A_040 IL_00225.5 | |
IL_5AJ0_071 | 1/A2/1714:1719, 1/A2/1774:1779 | 5x5 Sarcin-Ricin with intercalated A; G-bulge Not in a motif group | geometric IL_7A0S_027 NA | |
IL_5AJ0_072 | 1/A2/1719:1720, 1/A2/1772:1774 | Minor groove platform Not in a motif group | homologous IL_5TBW_039 IL_42622.6 | |
IL_5AJ0_073 | 1/A2/1721:1726, 1/A2/1768:1771 | C-loop Not in a motif group | homologous IL_5TBW_040 IL_02509.2 | |
IL_5AJ0_074 | 1/A2/1728:1731, 1/A2/1763:1766 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5TBW_041 IL_35199.1 | |
IL_5AJ0_075 | 1/A2/1731:1733, 1/A2/1761:1763 | Isolated non-canonical cWW Not in a motif group | geometric IL_5TBW_042 IL_64928.1 | |
IL_5AJ0_076 | 1/A2/1735:1738, 1/A2/1757:1759 | Major groove platform with extra cWW Not in a motif group | geometric IL_4V9F_003 IL_18471.2 | |
IL_5AJ0_077 | 1/A2/1738:1742, 1/A2/1754:1757 | No text annotation Not in a motif group | ||
IL_5AJ0_078 | 1/A2/1742:1745, 1/A2/1751:1754 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_1MFQ_004 IL_73915.1 | |
IL_5AJ0_079 | 1/A2/1796:1798, 1/A2/1805:1806 | Single bulged A Not in a motif group | homologous IL_5TBW_045 IL_37497.8 | |
IL_5AJ0_080 | 1/A2/1839:1841, 1/A2/1855:1857 | Isolated non-canonical cWW Not in a motif group | homologous IL_5TBW_046 IL_64928.1 | |
IL_5AJ0_081 | 1/A2/1842:1844, 1/A2/1852:1854 | No text annotation Not in a motif group | homologous IL_8C3A_050 NA | |
IL_5AJ0_082 | 1/A2/1886:1890, 1/A2/2048:2052 | UAA/GAN Not in a motif group | homologous IL_5TBW_048 IL_89002.3 | |
IL_5AJ0_083 | 1/A2/1892:1901, 1/A2/2044:2046 | No text annotation Not in a motif group | ||
IL_5AJ0_084 | 1/A2/1901:1903, 1/A2/2043:2044 | No text annotation Not in a motif group | ||
IL_5AJ0_085 | 1/A2/1907:1914, 1/A2/2034:2039 | No text annotation Not in a motif group | geometric IL_5TBW_051 IL_27086.1 | |
IL_5AJ0_086 | 1/A2/1914:1925, 1/A2/2019:2034 | No text annotation Not in a motif group | geometric IL_5TBW_052 IL_53762.1 | |
IL_5AJ0_087 | 1/A2/1927:1929, 1/A2/2016:2017 | Single bulged U Not in a motif group | geometric IL_5TBW_053 IL_83039.18 | |
IL_5AJ0_088 | 1/A2/1929:1931, 1/A2/2014:2016 | Isolated non-canonical cWW Not in a motif group | geometric IL_1YZ9_002 IL_64928.1 | |
IL_5AJ0_089 | 1/A2/1938:1947, 1/A2/2002:2007 | No text annotation Not in a motif group | ||
IL_5AJ0_092 | 1/A2/2064:2066, 1/A2/2250:2252 | Isolated non-canonical cWW Not in a motif group | geometric IL_1Y27_001 IL_64928.1 | |
IL_5AJ0_093 | 1/A2/2269:2271, 1/A2/2321:2324 | Isolated cWS basepair Not in a motif group | homologous IL_5TBW_057 IL_73554.1 | |
IL_5AJ0_094 | 1/A2/2278:2280, 1/A2/2313:2314 | Single bulged A Not in a motif group | homologous IL_8C3A_062 IL_37497.8 | |
IL_5AJ0_095 | 1/A2/2281:2288, 1/A2/2308:2312 | Kink-turn Not in a motif group | homologous IL_5TBW_059 IL_70923.4 | |
IL_5AJ0_096 | 1/A2/2291:2293, 1/A2/2304:2305 | Single bulged A Not in a motif group | geometric IL_5FJC_001 IL_37497.8 | |
IL_5AJ0_097 | 1/A2/2337:2343, 1/A2/3829:3834 | 7x6 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5TBW_061 IL_76042.3 | |
IL_5AJ0_098 | 1/A2/2385:2388, 1/A2/2762:2763 | Major groove platform; stack outside cWW Not in a motif group | geometric IL_4V9F_050 IL_50694.3 | |
IL_5AJ0_099 | 1/A2/2394:2399, 1/A2/2405:2408 | No text annotation Not in a motif group | ||
IL_5AJ0_100 | 1/A2/2425:2429, 1/A2/2488:2493 | UAA/GAN Not in a motif group | homologous IL_5TBW_063 IL_89002.3 | |
IL_5AJ0_101 | 1/A2/2456:2458, 1/A2/2478:2479 | Single stack bend Not in a motif group | geometric IL_7KGA_003 IL_67809.1 | |
IL_5AJ0_102 | 1/A2/2463:2465, 1/A2/2471:2473 | Isolated cWH basepair Not in a motif group | geometric IL_4V88_405 IL_27267.1 | |
IL_5AJ0_104 | 1/A2/2521:2526, 1/A2/2751:2753 | Isolated non-canonical cWW Not in a motif group | geometric IL_7RQB_041 NA | |
IL_5AJ0_105 | 1/A2/2528:2529, 1/A2/2747:2749 | Single bulged U Not in a motif group | geometric IL_6JQ6_006 IL_83039.18 | |
IL_5AJ0_106 | 1/A2/2568:2572, 1/A2/2731:2735 | Triple sheared Not in a motif group | homologous IL_5TBW_067 IL_95716.1 | |
IL_5AJ0_108 | 1/A2/2592:2593, 1/A2/2703:2705 | Single bulged C Not in a motif group | homologous IL_8C3A_075 IL_61258.13 | |
IL_5AJ0_109 | 1/A2/2593:2594, 1/A2/2701:2703 | Single stack bend Not in a motif group | geometric IL_5TBW_070 IL_67809.1 | |
IL_5AJ0_110 | 1/A2/2625:2627, 1/A2/2664:2667 | Isolated tHS basepair with bulges Not in a motif group | geometric IL_4V9F_076 IL_38958.9 | |
IL_5AJ0_296 | 1/A2/2630:2632, 1/A2/2660:2661 | Single bulged G Not in a motif group | geometric IL_7D7W_002 IL_00225.5 | |
IL_5AJ0_112 | 1/A2/2635:2641, 1/A2/2651:2657 | Kink-turn Not in a motif group | homologous IL_5TBW_073 IL_60192.2 | |
IL_5AJ0_113 | 1/A2/2811:2817, 1/A2/3821:3824 | No text annotation Not in a motif group | homologous IL_5TBW_074 IL_49460.2 | |
IL_5AJ0_114 | 1/A2/2823:2825, 1/A2/3813:3815 | Isolated tWW turn Not in a motif group | homologous IL_5TBW_075 IL_54997.8 | |
IL_5AJ0_115 | 1/A2/2826:2829, 1/A2/3811:3812 | No text annotation Not in a motif group | homologous IL_8C3A_082 IL_50694.3 | |
IL_5AJ0_297 | 1/A2/2826:2834, 1/A2/3808:3812 | No text annotation Not in a motif group | homologous IL_8C3A_484 IL_22854.1 | |
IL_5AJ0_116 | 1/A2/2829:2834, 1/A2/3808:3811 | Intercalated tWH Not in a motif group | geometric IL_5TBW_077 IL_68582.1 | |
IL_5AJ0_117 | 1/A2/2846:2851, 1/A2/2856:2862 | No text annotation Not in a motif group | homologous IL_8C3A_084 IL_65969.4 | |
IL_5AJ0_118 | 1/A2/2868:2870, 1/A2/3581:3583 | Isolated non-canonical cWW Not in a motif group | homologous IL_8C3A_085 IL_64928.1 | |
IL_5AJ0_119 | 1/A2/2875:2876, 1/A2/3573:3576 | No text annotation Not in a motif group | homologous IL_8C3A_086 IL_74125.1 | |
IL_5AJ0_120 | 1/A2/3603:3604, 1/A2/3798:3800 | Single bulged A Not in a motif group | homologous IL_5TBW_082 IL_37497.8 | |
IL_5AJ0_121 | 1/A2/3631:3636, 1/A2/3648:3655 | Kink-turn related Not in a motif group | homologous IL_5TBW_083 IL_64509.1 | |
IL_5AJ0_122 | 1/A2/3671:3674, 1/A2/3720:3721 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_5TBW_084 IL_88739.4 | |
IL_5AJ0_123 | 1/A2/3675:3676, 1/A2/3716:3719 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_5TBW_085 IL_92880.1 | |
IL_5AJ0_124 | 1/A2/3679:3685, 1/A2/3710:3713 | No text annotation Not in a motif group | ||
IL_5AJ0_125 | 1/A2/3686:3692, 1/A2/3703:3709 | No text annotation Not in a motif group | homologous IL_5TBW_088 IL_36973.7 | |
IL_5AJ0_126 | 1/A2/3726:3727, 1/A2/3739:3741 | Single stack bend Not in a motif group | geometric IL_5TBW_009 IL_67809.1 | |
IL_5AJ0_127 | 1/A2/3751:3752, 1/A2/3782:3785 | Bulged stacked bases Not in a motif group | geometric IL_5TBW_089 IL_59677.4 | |
IL_5AJ0_128 | 1/A2/3752:3763, 1/A2/3779:3782 | No text annotation Not in a motif group | homologous IL_5TBW_090 IL_66080.1 | |
IL_5AJ0_129 | 1/A2/3866:3869, 1/A2/4525:4527 | No text annotation Not in a motif group | homologous IL_8C3A_096 IL_63450.4 | |
IL_5AJ0_130 | 1/A2/3871:3873, 1/A2/4520:4523 | Major groove platform with intercalation Not in a motif group | homologous IL_5TBW_092 IL_54678.6 | |
IL_5AJ0_131 | 1/A2/3884:3886, 1/A2/4350:4351 | Single bulged U Not in a motif group | homologous IL_8C3A_098 IL_83039.18 | |
IL_5AJ0_132 | 1/A2/3887:3888, 1/A2/4346:4349 | Minor groove platform Not in a motif group | homologous IL_5TBW_094 IL_42622.6 | |
IL_5AJ0_133 | 1/A2/3898:3900, 1/A2/4143:4146 | No text annotation Not in a motif group | homologous IL_8C3A_100 IL_38958.9 | |
IL_5AJ0_134 | 1/A2/3914:3916, 1/A2/4038:4040 | Isolated cWH basepair Not in a motif group | geometric IL_3R1C_012 IL_66171.1 | |
IL_5AJ0_135 | 1/A2/3919:3920, 1/A2/4033:4035 | Minor groove platform Not in a motif group | geometric IL_6DLR_003 IL_42622.6 | |
IL_5AJ0_136 | 1/A2/3921:3923, 1/A2/4030:4032 | No text annotation Not in a motif group | geometric IL_7A0S_026 IL_27267.1 | |
IL_5AJ0_137 | 1/A2/3924:3937, 1/A2/4025:4029 | No text annotation Not in a motif group | ||
IL_5AJ0_138 | 1/A2/3941:3944, 1/A2/4008:4021 | No text annotation Not in a motif group | geometric IL_1MZP_003 IL_75283.2 | |
IL_5AJ0_139 | 1/A2/4052:4058, 1/A2/4123:4126 | No text annotation Not in a motif group | homologous IL_8C3A_106 IL_74114.1 | |
IL_5AJ0_140 | 1/A2/4064:4069, 1/A2/4080:4083 | No text annotation Not in a motif group | ||
IL_5AJ0_141 | 1/A2/4069:4071, 1/A2/4077:4080 | No text annotation Not in a motif group | ||
IL_5AJ0_142 | 1/A2/4153:4154, 1/A2/4164:4166 | Single bulged A Not in a motif group | homologous IL_8C3A_107 IL_37497.8 | |
IL_5AJ0_143 | 1/A2/4205:4207, 1/A2/4225:4229 | Isolated tHS basepair with bulges Not in a motif group | geometric IL_7RQB_082 NA | |
IL_5AJ0_144 | 1/A2/4257:4260, 1/A2/4274:4277 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5TBW_100 IL_73915.1 | |
IL_5AJ0_145 | 1/A2/4309:4312, 1/A2/4326:4327 | Single stack bend Not in a motif group | geometric IL_5J7L_032 IL_67809.1 | |
IL_5AJ0_146 | 1/A2/4362:4363, 1/A2/4404:4406 | Major groove platform Not in a motif group | homologous IL_5TBW_102 IL_27635.5 | |
IL_5AJ0_147 | 1/A2/4363:4365, 1/A2/4402:4404 | Isolated non-canonical cWW Not in a motif group | geometric IL_5TBW_103 IL_64928.1 | |
IL_5AJ0_148 | 1/A2/4365:4367, 1/A2/4401:4402 | Major groove platform Not in a motif group | homologous IL_5TBW_104 IL_76223.4 | |
IL_5AJ0_149 | 1/A2/4367:4369, 1/A2/4397:4401 | No text annotation Not in a motif group | geometric IL_5TBW_105 IL_47499.1 | |
IL_5AJ0_150 | 1/A2/4374:4378, 1/A2/4388:4392 | No text annotation Not in a motif group | homologous IL_8C3A_114 IL_93820.1 | |
IL_5AJ0_151 | 1/A2/4415:4416, 1/A2/4488:4490 | Major groove platform Not in a motif group | homologous IL_5TBW_107 IL_76223.4 | |
IL_5AJ0_152 | 1/A2/4418:4420, 1/A2/4482:4486 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_5TBW_108 IL_54650.1 | |
IL_5AJ0_153 | 1/A2/4420:4421, 1/A2/4479:4482 | Multiple bulged bases Not in a motif group | homologous IL_5TBW_109 IL_24807.1 | |
IL_5AJ0_154 | 1/A2/4428:4430, 1/A2/4451:4453 | Isolated non-canonical cWW Not in a motif group | geometric IL_5TBW_110 IL_64928.1 | |
IL_5AJ0_298 | 1/A2/4428:4432, 1/A2/4447:4453 | No text annotation Not in a motif group | ||
IL_5AJ0_155 | 1/A2/4430:4432, 1/A2/4447:4451 | No text annotation Not in a motif group | ||
IL_5AJ0_156 | 1/A2/4457:4459, 1/A2/4465:4467 | Isolated non-canonical cWW Not in a motif group | geometric IL_5TBW_112 IL_64928.1 | |
IL_5AJ0_157 | 1/A2/4499:4500, 1/A2/4509:4511 | Single bulged A Not in a motif group | geometric IL_1U9S_001 IL_37497.8 | |
IL_5AJ0_158 | 1/A2/4542:4544, 1/A2/4683:4685 | No text annotation Not in a motif group | geometric IL_3ICQ_003 NA | |
IL_5AJ0_159 | 1/A2/4544:4547, 1/A2/4679:4683 | Double sheared Not in a motif group | geometric IL_7A0S_081 IL_09705.12 | |
IL_5AJ0_160 | 1/A2/4552:4554, 1/A2/4580:4582 | Isolated non-canonical cWW Not in a motif group | homologous IL_8C3A_124 IL_64928.1 | |
IL_5AJ0_161 | 1/A2/4558:4565, 1/A2/4570:4576 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_8C3A_125 IL_04346.8 | |
IL_5AJ0_162 | 1/A2/4586:4591, 1/A2/4631:4635 | No text annotation Not in a motif group | ||
IL_5AJ0_163 | 1/A2/4594:4599, 1/A2/4624:4628 | UAA/GAN related Not in a motif group | homologous IL_5TBW_118 IL_17136.3 | |
IL_5AJ0_164 | 1/A2/4600:4602, 1/A2/4621:4623 | No text annotation Not in a motif group | geometric IL_4V88_395 IL_76636.1 | |
IL_5AJ0_165 | 1/A2/4603:4604, 1/A2/4617:4620 | Multiple bulged bases Not in a motif group | homologous IL_5TBW_119 IL_24807.1 | |
IL_5AJ0_299 | 1/A2/4603:4605, 1/A2/4616:4620 | Isolated non-canonical cWW Not in a motif group | geometric IL_4M4O_001 IL_64928.1 | |
IL_5AJ0_166 | 1/A2/4642:4647, 1/A2/4667:4672 | UAA/GAN with extra cWW Not in a motif group | geometric IL_5J7L_350 IL_49767.7 | |
IL_5AJ0_167 | 1/A2/4701:4704, 1/A2/4916:4918 | No text annotation Not in a motif group | ||
IL_5AJ0_168 | 1/A2/4704:4708, 1/A2/4911:4916 | No text annotation Not in a motif group | ||
IL_5AJ0_169 | 1/A2/4709:4711, 1/A2/4909:4910 | Single stack bend Not in a motif group | geometric IL_7KGA_003 IL_67809.1 | |
IL_5AJ0_170 | 1/A2/4730:4733, 1/A2/4819:4822 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_6JDV_002 IL_73915.1 | |
IL_5AJ0_171 | 1/A2/4843:4847, 1/A2/4888:4892 | No text annotation Not in a motif group | geometric IL_8S95_002 IL_32711.1 | |
IL_5AJ0_300 | 1/A2/4848:4855, 1/A2/4881:4887 | No text annotation Not in a motif group | ||
IL_5AJ0_174 | 1/A2/4857:4859, 1/A2/4878:4879 | Minor groove platform Not in a motif group | geometric IL_4WF9_081 IL_42622.6 | |
IL_5AJ0_175 | 1/A2/4930:4933, 1/A2/4941:4944 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_5TBW_129 IL_86432.1 | |
IL_5AJ0_176 | 1/A2/4950:4952, 1/A2/5015:5017 | Isolated non-canonical cWW Not in a motif group | geometric IL_3IVK_002 IL_64928.1 | |
IL_5AJ0_177 | 1/A2/4954:4955, 1/A2/5011:5013 | Single bulged U Not in a motif group | homologous IL_5TBW_131 IL_83039.18 | |
IL_5AJ0_178 | 1/A2/4958:4960, 1/A2/5003:5008 | Isolated non-canonical cWW Not in a motif group | homologous IL_5TBW_132 IL_21175.1 | |
IL_5AJ0_179 | 1/A2/4961:4967, 1/A2/4997:5002 | No text annotation Not in a motif group | ||
IL_5AJ0_180 | 1/A2/4970:4972, 1/A2/4993:4994 | Single bulged U Not in a motif group | homologous IL_8C3A_140 IL_83039.18 | |
IL_5AJ0_181 | 1/A2/4972:4975, 1/A2/4990:4993 | Double sheared; A in syn Not in a motif group | geometric IL_5TBW_135 IL_09705.12 | |
IL_5AJ0_301 | 1/A3/44:64, 1/A3/95:99 | No text annotation Not in a motif group | homologous IL_8C3A_150 IL_44998.1 | |
IL_5AJ0_182 | 1/A3/64:66, 1/A3/92:95 | Isolated non-canonical cWW Not in a motif group | homologous IL_5TBW_145 IL_54650.1 | |
IL_5AJ0_183 | 1/A4/6:8, 1/A4/111:113 | Isolated non-canonical cWW Not in a motif group | geometric IL_5C5W_002 IL_64928.1 | |
IL_5AJ0_184 | 1/A4/15:16, 1/A4/62:64 | Single bulged A Not in a motif group | homologous IL_5TBW_372 IL_37497.8 | |
IL_5AJ0_185 | 1/A4/21:27, 1/A4/52:57 | Minor groove platform related Not in a motif group | homologous IL_5TBW_373 IL_10207.2 | |
IL_5AJ0_186 | 1/A4/28:31, 1/A4/46:51 | No text annotation Not in a motif group | ||
IL_5AJ0_187 | 1/A4/32:36, 1/A4/41:45 | Symmetric double minor groove platform Not in a motif group | geometric IL_7RQB_114 NA | |
IL_5AJ0_188 | 1/A4/71:78, 1/A4/98:104 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5TBW_377 IL_04346.8 | |
IL_5AJ0_189 | 1/A4/79:81, 1/A4/95:97 | Isolated non-canonical cWW Not in a motif group | geometric IL_5TBW_034 IL_64928.1 | |
IL_5AJ0_190 | 1/A4/82:85, 1/A4/92:94 | Isolated non-canonical cWW Not in a motif group | homologous IL_5TBW_378 IL_64928.1 | |
IL_5AJ0_191 | 1/B1/23:25, 1/B1/649:651 | Isolated non-canonical cWW Not in a motif group | geometric IL_5J7L_259 IL_64928.1 | |
IL_5AJ0_192 | 1/B1/34:36, 1/B1/519:521 | Isolated non-canonical cWW Not in a motif group | homologous IL_4V88_385 IL_64928.1 | |
IL_5AJ0_193 | 1/B1/37:40, 1/B1/514:518 | Double sheared Not in a motif group | geometric IL_4WF9_016 IL_09705.12 | |
IL_5AJ0_194 | 1/B1/41:47, 1/B1/479:481 | No text annotation Not in a motif group | homologous IL_4V88_387 IL_33912.1 | |
IL_5AJ0_195 | 1/B1/49:51, 1/B1/476:477 | Minor groove platform Not in a motif group | homologous IL_4V88_388 IL_80097.3 | |
IL_5AJ0_196 | 1/B1/57:62, 1/B1/86:88 | No text annotation Not in a motif group | homologous IL_4V88_389 IL_95004.1 | |
IL_5AJ0_197 | 1/B1/63:68, 1/B1/81:85 | No text annotation Not in a motif group | homologous IL_4V88_390 IL_77691.2 | |
IL_5AJ0_198 | 1/B1/108:110, 1/B1/351:353 | Isolated non-canonical cWW Not in a motif group | geometric IL_1ZX7_004 IL_64928.1 | |
IL_5AJ0_199 | 1/B1/110:112, 1/B1/349:351 | No text annotation Not in a motif group | geometric IL_4WF9_042 IL_74602.1 | |
IL_5AJ0_200 | 1/B1/112:115, 1/B1/348:349 | Multiple bulged bases Not in a motif group | geometric IL_6JXM_001 IL_85666.1 | |
IL_5AJ0_201 | 1/B1/115:121, 1/B1/343:348 | No text annotation Not in a motif group | ||
IL_5AJ0_202 | 1/B1/145:151, 1/B1/167:174 | No text annotation Not in a motif group | homologous IL_8C3A_402 IL_80604.3 | |
IL_5AJ0_203 | 1/B1/152:155, 1/B1/163:166 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_1JID_002 IL_73915.1 | |
IL_5AJ0_204 | 1/B1/188:192, 1/B1/207:211 | Triple sheared Not in a motif group | geometric IL_5J7L_274 IL_08257.1 | |
IL_5AJ0_206 | 1/B1/312:314, 1/B1/336:337 | Single bulged A Not in a motif group | geometric IL_4V88_399 IL_37497.8 | |
IL_5AJ0_208 | 1/B1/317:319, 1/B1/332:333 | No text annotation Not in a motif group | ||
IL_5AJ0_209 | 1/B1/359:364, 1/B1/396:403 | Kink-turn with non-sequential stacking Not in a motif group | homologous IL_4V88_402 IL_45067.4 | |
IL_5AJ0_210 | 1/B1/366:371, 1/B1/393:394 | No text annotation Not in a motif group | geometric IL_5Y58_001 IL_48100.3 | |
IL_5AJ0_211 | 1/B1/411:413, 1/B1/424:429 | No text annotation Not in a motif group | homologous IL_4V88_404 IL_11347.1 | |
IL_5AJ0_212 | 1/B1/437:439, 1/B1/454:456 | Isolated cWH basepair Not in a motif group | homologous IL_4V88_405 IL_27267.1 | |
IL_5AJ0_213 | 1/B1/459:461, 1/B1/468:470 | Isolated near basepair Not in a motif group | homologous IL_4V88_406 IL_64928.1 | |
IL_5AJ0_214 | 1/B1/491:495, 1/B1/508:509 | C-loop Not in a motif group | geometric IL_5J7L_018 IL_75255.1 | |
IL_5AJ0_302 | 1/B1/495:497, 1/B1/505:508 | Isolated cWH basepair Not in a motif group | geometric IL_3R1C_017 IL_66171.1 | |
IL_5AJ0_217 | 1/B1/530:531, 1/B1/553:555 | Single bulged A Not in a motif group | geometric IL_7RQB_101 NA | |
IL_5AJ0_218 | 1/B1/535:537, 1/B1/546:549 | No text annotation Not in a motif group | ||
IL_5AJ0_219 | 1/B1/598:606, 1/B1/636:638 | No text annotation Not in a motif group | ||
IL_5AJ0_220 | 1/B1/606:608, 1/B1/635:636 | Single bulged U Not in a motif group | geometric IL_7RQB_080 NA | |
IL_5AJ0_221 | 1/B1/611:617, 1/B1/624:632 | Kink-turn related Not in a motif group | homologous IL_4V88_415 IL_54177.1 | |
IL_5AJ0_222 | 1/B1/663:665, 1/B1/1162:1164 | Isolated non-canonical cWW Not in a motif group | geometric IL_1Y27_001 IL_64928.1 | |
IL_5AJ0_223 | 1/B1/665:671, 1/B1/1161:1162 | No text annotation Not in a motif group | homologous IL_4V88_416 IL_38186.2 | |
IL_5AJ0_224 | 1/B1/673:675, 1/B1/1030:1032 | Isolated non-canonical cWW Not in a motif group | homologous IL_4V88_417 IL_64928.1 | |
IL_5AJ0_225 | 1/B1/676:680, 1/B1/1025:1029 | tSH-tHW-tHS Not in a motif group | homologous IL_4V88_418 IL_17136.3 | |
IL_5AJ0_226 | 1/B1/745:747, 1/B1/794:796 | No text annotation Not in a motif group | geometric IL_5TBW_079 IL_74602.1 | |
IL_5AJ0_227 | 1/B1/747:750, 1/B1/793:794 | Major groove minor groove platform; mini C-loop Not in a motif group | geometric IL_1U9S_004 IL_09061.10 | |
IL_5AJ0_303 | 1/B1/802:803, 1/B1/860:863 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_8C3A_430 IL_09061.10 | |
IL_5AJ0_229 | 1/B1/805:807, 1/B1/856:858 | Isolated non-canonical cWW Not in a motif group | homologous IL_4V88_424 IL_64928.1 | |
IL_5AJ0_230 | 1/B1/807:815, 1/B1/849:856 | No text annotation Not in a motif group | geometric IL_4V88_425 IL_53064.1 | |
IL_5AJ0_231 | 1/B1/877:881, 1/B1/905:910 | No text annotation Not in a motif group | ||
IL_5AJ0_233 | 1/B1/922:923, 1/B1/1019:1022 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_4V88_428 IL_50694.3 | |
IL_5AJ0_304 | 1/B1/925:926, 1/B1/1015:1017 | Single bulged U Not in a motif group | geometric IL_8C3A_140 IL_83039.18 | |
IL_5AJ0_235 | 1/B1/928:931, 1/B1/1010:1013 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_430 IL_32955.1 | |
IL_5AJ0_236 | 1/B1/931:935, 1/B1/1007:1010 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4V88_431 IL_73915.1 | |
IL_5AJ0_237 | 1/B1/942:945, 1/B1/981:984 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_432 IL_32955.1 | |
IL_5AJ0_238 | 1/B1/952:956, 1/B1/967:974 | Kink-turn Not in a motif group | homologous IL_4V88_434 IL_45067.4 | |
IL_5AJ0_239 | 1/B1/1042:1047, 1/B1/1071:1073 | Other IL Not in a motif group | homologous IL_4V88_435 IL_22046.1 | |
IL_5AJ0_240 | 1/B1/1047:1051, 1/B1/1067:1071 | tSH-tHW-tHS Not in a motif group | geometric IL_4V88_436 IL_17136.3 | |
IL_5AJ0_241 | 1/B1/1091:1093, 1/B1/1152:1158 | No text annotation Not in a motif group | homologous IL_4V88_437 IL_62898.1 | |
IL_5AJ0_242 | 1/B1/1098:1101, 1/B1/1131:1134 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4V88_438 IL_73915.1 | |
IL_5AJ0_243 | 1/B1/1101:1103, 1/B1/1129:1131 | No text annotation Not in a motif group | geometric IL_4WF9_042 IL_74602.1 | |
IL_5AJ0_244 | 1/B1/1108:1110, 1/B1/1123:1124 | No text annotation Not in a motif group | homologous IL_8P9A_427 NA | |
IL_5AJ0_245 | 1/B1/1168:1175, 1/B1/1186:1191 | 8x6 Sarcin-Ricin with inserted Y; G-bulge Not in a motif group | homologous IL_4V88_440 IL_14135.1 | |
IL_5AJ0_246 | 1/B1/1202:1204, 1/B1/1694:1697 | No text annotation Not in a motif group | geometric IL_4KYY_002 IL_27267.1 | |
IL_5AJ0_247 | 1/B1/1206:1208, 1/B1/1691:1692 | Single bulged G Not in a motif group | homologous IL_4V88_442 IL_00225.5 | |
IL_5AJ0_249 | 1/B1/1214:1217, 1/B1/1681:1685 | C-loop Not in a motif group | homologous IL_4V88_443 IL_63596.8 | |
IL_5AJ0_305 | 1/B1/1214:1218, 1/B1/1680:1685 | No text annotation Not in a motif group | ||
IL_5AJ0_250 | 1/B1/1230:1232, 1/B1/1526:1528 | Isolated non-canonical cWW Not in a motif group | homologous IL_4V88_444 IL_64928.1 | |
IL_5AJ0_251 | 1/B1/1235:1236, 1/B1/1521:1523 | Minor groove platform Not in a motif group | homologous IL_4V88_445 IL_23419.1 | |
IL_5AJ0_252 | 1/B1/1270:1272, 1/B1/1510:1512 | Isolated non-canonical cWW Not in a motif group | geometric IL_4KYY_001 IL_64928.1 | |
IL_5AJ0_306 | 1/B1/1279:1290, 1/B1/1309:1318 | No text annotation Not in a motif group | ||
IL_5AJ0_254 | 1/B1/1281:1290, 1/B1/1309:1316 | No text annotation Not in a motif group | ||
IL_5AJ0_255 | 1/B1/1291:1293, 1/B1/1306:1308 | No text annotation Not in a motif group | homologous IL_4V88_448 IL_27844.3 | |
IL_5AJ0_256 | 1/B1/1325:1327, 1/B1/1502:1503 | Single bulged U Not in a motif group | homologous IL_4V88_449 IL_83039.18 | |
IL_5AJ0_257 | 1/B1/1329:1333, 1/B1/1498:1500 | Isolated cWS basepair Not in a motif group | homologous IL_4V88_450 IL_76319.2 | |
IL_5AJ0_307 | 1/B1/1329:1334, 1/B1/1496:1500 | No text annotation Not in a motif group | geometric IL_6CZR_365 IL_73915.1 | |
IL_5AJ0_308 | 1/B1/1329:1335, 1/B1/1492:1500 | No text annotation Not in a motif group | geometric IL_4V88_510 IL_62984.1 | |
IL_5AJ0_309 | 1/B1/1333:1334, 1/B1/1496:1498 | No text annotation Not in a motif group | ||
IL_5AJ0_310 | 1/B1/1334:1335, 1/B1/1492:1496 | Minor groove platform Not in a motif group | geometric IL_4LFB_045 IL_36388.1 | |
IL_5AJ0_259 | 1/B1/1337:1338, 1/B1/1488:1490 | Single bulged A Not in a motif group | homologous IL_4V88_452 IL_37497.8 | |
IL_5AJ0_260 | 1/B1/1347:1349, 1/B1/1380:1382 | Isolated cWH basepair Not in a motif group | homologous IL_4V88_453 IL_27267.1 | |
IL_5AJ0_261 | 1/B1/1363:1365, 1/B1/1374:1375 | Minor groove platform Not in a motif group | homologous IL_4V88_454 IL_80097.3 | |
IL_5AJ0_262 | 1/B1/1395:1399, 1/B1/1447:1450 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_6CZR_168 NA | |
IL_5AJ0_263 | 1/B1/1402:1406, 1/B1/1440:1444 | No text annotation Not in a motif group | ||
IL_5AJ0_264 | 1/B1/1407:1412, 1/B1/1425:1439 | No text annotation Not in a motif group | ||
IL_5AJ0_265 | 1/B1/1412:1415, 1/B1/1422:1425 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_402D_001 IL_35199.1 | |
IL_5AJ0_266 | 1/B1/1537:1539, 1/B1/1594:1596 | Isolated non-canonical cWW Not in a motif group | geometric IL_1ZH5_001 IL_64928.1 | |
IL_5AJ0_311 | 1/B1/1541:1550, 1/B1/1582:1592 | No text annotation Not in a motif group | ||
IL_5AJ0_267 | 1/B1/1550:1558, 1/B1/1577:1582 | No text annotation Not in a motif group | ||
IL_5AJ0_268 | 1/B1/1560:1562, 1/B1/1573:1575 | Isolated non-canonical cWW Not in a motif group | geometric IL_1YZ9_002 IL_64928.1 | |
IL_5AJ0_269 | 1/B1/1604:1610, 1/B1/1629:1635 | No text annotation Not in a motif group | homologous IL_8C3A_469 NA | |
IL_5AJ0_270 | 1/B1/1700:1702, 1/B1/1833:1836 | No text annotation Not in a motif group | homologous IL_4V88_463 IL_61438.1 | |
IL_5AJ0_271 | 1/B1/1702:1705, 1/B1/1829:1833 | No text annotation Not in a motif group | geometric IL_4V88_464 IL_65718.1 | |
IL_5AJ0_272 | 1/B1/1706:1708, 1/B1/1826:1828 | Isolated non-canonical cWW Not in a motif group | homologous IL_4V88_465 IL_64928.1 | |
IL_5AJ0_273 | 1/B1/1708:1711, 1/B1/1822:1826 | Non canonical cWW and near pair Not in a motif group | homologous IL_4V88_466 IL_99772.1 | |
IL_5AJ0_274 | 1/B1/1714:1716, 1/B1/1817:1819 | Isolated non-canonical cWW Not in a motif group | homologous IL_4V88_467 IL_64928.1 | |
IL_5AJ0_275 | 1/B1/1717:1720, 1/B1/1813:1816 | Double sheared Not in a motif group | homologous IL_4V88_468 IL_09705.12 | |
IL_5AJ0_276 | 1/B1/1720:1722, 1/B1/1812:1813 | Single bulged U Not in a motif group | geometric IL_4V88_469 IL_83039.18 | |
IL_5AJ0_277 | 1/B1/1729:1731, 1/B1/1803:1805 | No text annotation Not in a motif group | homologous IL_4V88_470 IL_27267.1 | |
IL_5AJ0_278 | 1/B1/1733:1736, 1/B1/1798:1801 | Double sheared Not in a motif group | homologous IL_4V88_471 IL_09705.12 | |
IL_5AJ0_279 | 1/B1/1736:1738, 1/B1/1796:1798 | Isolated non-canonical cWW Not in a motif group | geometric IL_7A0S_020 IL_64928.1 | |
IL_5AJ0_280 | 1/B1/1739:1741, 1/B1/1793:1795 | Isolated non-canonical cWW Not in a motif group | geometric IL_2O3Y_004 IL_64928.1 | |
IL_5AJ0_281 | 1/B1/1742:1746, 1/B1/1788:1792 | Triple sheared Not in a motif group | homologous IL_4V88_474 IL_08257.1 | |
IL_5AJ0_282 | 1/B1/1750:1752, 1/B1/1780:1784 | No text annotation Not in a motif group | ||
IL_5AJ0_283 | 1/Bv/50:52, 1/Bv/62:64 | No text annotation Not in a motif group | homologous IL_4V9K_064 IL_27267.1 | |
IL_5AJ0_284 | 1/Bw/49:52, 1/Bw/62:65 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_5EW4_002 IL_73915.1 |
Problematic loops
# | loop id | Problem | Sequence |
---|---|---|---|
IL_5AJ0_008 | Isolated non-canonical cWW | ||
IL_5AJ0_023 | No text annotation | ||
IL_5AJ0_036 | No text annotation | ||
IL_5AJ0_050 | Isolated non-canonical cWW | ||
IL_5AJ0_051 | No text annotation | ||
IL_5AJ0_062 | Isolated non-canonical cWW | ||
IL_5AJ0_069 | No text annotation | ||
IL_5AJ0_090 | Isolated cWS basepair | ||
IL_5AJ0_091 | No text annotation | ||
IL_5AJ0_103 | No text annotation | ||
IL_5AJ0_107 | Isolated non-canonical cWW | ||
IL_5AJ0_111 | Isolated cWS basepair | ||
IL_5AJ0_172 | No text annotation | ||
IL_5AJ0_173 | Isolated non-canonical cWW | ||
IL_5AJ0_205 | Isolated cWS basepair | ||
IL_5AJ0_207 | Isolated non-canonical cWW | ||
IL_5AJ0_215 | Tandem non-canonical cWW pairs | ||
IL_5AJ0_216 | Isolated non-canonical cWW | ||
IL_5AJ0_228 | Major groove minor groove platform with extra cWW | ||
IL_5AJ0_232 | Isolated cWH basepair | ||
IL_5AJ0_234 | Tandem non-canonical cWW pairs | ||
IL_5AJ0_248 | Isolated non-canonical cWW | ||
IL_5AJ0_253 | No text annotation | ||
IL_5AJ0_258 | Minor groove platform with extra cWW |
Valid loops
3D | Loop id | Location | Annotation; motif group | Mapped info |
---|---|---|---|---|
J3_5AJ0_001 | 1/A2/112:118, 1/A2/151:158, 1/A2/269:272 | No text annotation Not in a motif group | ||
J3_5AJ0_026 | 1/A2/188:199, 1/A2/208:218, 1/A2/222:245 | No text annotation Not in a motif group | ||
J3_5AJ0_027 | 1/A2/345:361, 1/A2/368:373, 1/A3/21:24 | No text annotation Not in a motif group | homologous J3_8P9A_045 NA | |
J3_5AJ0_028 | 1/A2/374:384, 1/A2/395:409, 1/A3/19:20 | No text annotation Not in a motif group | homologous J3_8P9A_047 NA | |
J3_5AJ0_002 | 1/A2/442:450, 1/A2/692:696, 1/A2/1275:1281 | No text annotation Not in a motif group | ||
J3_5AJ0_029 | 1/A2/701:704, 1/A2/942:964, 1/A2/1260:1269 | No text annotation Not in a motif group | ||
J3_5AJ0_030 | 1/A2/1083:1087, 1/A2/1148:1150, 1/A2/1177:1178 | No text annotation Not in a motif group | ||
J3_5AJ0_003 | 1/A2/1513:1519, 1/A2/1604:1606, 1/A2/1622:1625 | No text annotation Not in a motif group | homologous J3_5TBW_004 NA | |
J3_5AJ0_004 | 1/A2/1527:1530, 1/A2/1562:1566, 1/A2/1591:1596 | No text annotation Not in a motif group | homologous J3_5TBW_005 NA | |
J3_5AJ0_031 | 1/A2/1708:1709, 1/A2/1784:1789, 1/A2/1813:1818 | No text annotation Not in a motif group | ||
J3_5AJ0_005 | 1/A2/1950:1952, 1/A2/1976:1986, 1/A2/1995:1999 | No text annotation Not in a motif group | ||
J3_5AJ0_006 | 1/A2/2372:2378, 1/A2/2784:2786, 1/A2/2798:2801 | No text annotation Not in a motif group | homologous J3_5TBW_008 NA | |
J3_5AJ0_007 | 1/A2/2381:2384, 1/A2/2764:2770, 1/A2/2779:2781 | No text annotation Not in a motif group | homologous J3_8C3A_007 NA | |
J3_5AJ0_032 | 1/A2/2419:2424, 1/A2/2494:2498, 1/A2/2515:2516 | No text annotation Not in a motif group | homologous J3_8C3A_052 NA | |
J3_5AJ0_033 | 1/A2/2430:2435, 1/A2/2444:2455, 1/A2/2480:2487 | No text annotation Not in a motif group | ||
J3_5AJ0_008 | 1/A2/2530:2534, 1/A2/2551:2554, 1/A2/2736:2746 | No text annotation Not in a motif group | ||
J3_5AJ0_034 | 1/A2/2554:2555, 1/A2/2564:2568, 1/A2/2735:2736 | No text annotation Not in a motif group | homologous J3_8C3A_054 NA | |
J3_5AJ0_035 | 1/A2/2577:2581, 1/A2/2716:2717, 1/A2/2721:2726 | No text annotation Not in a motif group | homologous J3_8P9A_058 NA | |
J3_5AJ0_009 | 1/A2/3908:3910, 1/A2/4044:4048, 1/A2/4130:4135 | No text annotation Not in a motif group | geometric J3_5J7L_044 NA | |
J3_5AJ0_010 | 1/A2/4061:4064, 1/A2/4083:4098, 1/A2/4117:4120 | No text annotation Not in a motif group | homologous J3_8C3A_009 NA | |
J3_5AJ0_036 | 1/A2/4190:4192, 1/A2/4293:4304, 1/A2/4332:4337 | No text annotation Not in a motif group | homologous J3_8C3A_056 NA | |
J3_5AJ0_011 | 1/A2/4203:4205, 1/A2/4229:4231, 1/A2/4240:4245 | No text annotation Not in a motif group | homologous J3_5TBW_013 NA | |
J3_5AJ0_012 | 1/A2/4425:4428, 1/A2/4453:4455, 1/A2/4469:4475 | No text annotation Not in a motif group | homologous J3_5TBW_014 NA | |
J3_5AJ0_037 | 1/A2/4711:4733, 1/A2/4819:4841, 1/A2/4894:4909 | No text annotation Not in a motif group | ||
J3_5AJ0_013 | 1/A2/4928:4930, 1/A2/4944:4950, 1/A2/5017:5021 | No text annotation Not in a motif group | ||
J3_5AJ0_014 | 1/A3/44:55, 1/A3/62:64, 1/A3/95:99 | No text annotation Not in a motif group | geometric J3_4WF9_001 NA | |
J3_5AJ0_038 | 1/A4/9:14, 1/A4/65:66, 1/A4/109:110 | No text annotation Not in a motif group | homologous J3_8C3A_059 NA | |
J3_5AJ0_039 | 1/B1/40:41, 1/B1/481:489, 1/B1/511:514 | No text annotation Not in a motif group | ||
J3_5AJ0_040 | 1/B1/223:238, 1/B1/283:288, 1/B1/295:298 | No text annotation Not in a motif group | ||
J3_5AJ0_016 | 1/B1/816:819, 1/B1/829:831, 1/B1/843:848 | No text annotation Not in a motif group | homologous J3_4V88_032 NA | |
J3_5AJ0_017 | 1/B1/938:941, 1/B1/985:993, 1/B1/1000:1004 | No text annotation Not in a motif group | homologous J3_4V88_033 NA | |
J3_5AJ0_018 | 1/B1/1094:1096, 1/B1/1136:1140, 1/B1/1147:1151 | No text annotation Not in a motif group | ||
J3_5AJ0_019 | 1/B1/1218:1221, 1/B1/1645:1651, 1/B1/1673:1680 | No text annotation Not in a motif group | homologous J3_4V88_035 NA | |
J3_5AJ0_020 | 1/B1/1225:1228, 1/B1/1530:1532, 1/B1/1638:1641 | No text annotation Not in a motif group | homologous J3_4V88_036 NA | |
J3_5AJ0_021 | 1/B1/1237:1244, 1/B1/1255:1266, 1/B1/1516:1520 | No text annotation Not in a motif group | homologous J3_8C3A_040 NA | |
J3_5AJ0_022 | 1/B1/1272:1277, 1/B1/1320:1324, 1/B1/1504:1510 | No text annotation Not in a motif group | homologous J3_4V88_038 NA | |
J3_5AJ0_023 | 1/B1/1340:1345, 1/B1/1384:1389, 1/B1/1481:1486 | No text annotation Not in a motif group | homologous J3_4V88_039 NA | |
J3_5AJ0_041 | 1/B1/1350:1351, 1/B1/1360:1363, 1/B1/1375:1379 | No text annotation Not in a motif group | homologous J3_8C3A_085 NA | |
J3_5AJ0_024 | 1/B1/1391:1395, 1/B1/1450:1456, 1/B1/1470:1479 | No text annotation Not in a motif group | ||
J3_5AJ0_025 | 1/B1/1532:1536, 1/B1/1597:1604, 1/B1/1635:1638 | No text annotation Not in a motif group | homologous J3_8C3A_044 NA | |
J4_5AJ0_001 | 1/A2/964:970, 1/A2/1053:1058, 1/A2/1219:1228, 1/A2/1248:1260 | No text annotation Not in a motif group | ||
J4_5AJ0_002 | 1/A2/2344:2350, 1/A2/2368:2370, 1/A2/2803:2808, 1/A2/3827:3828 | No text annotation Not in a motif group | ||
J4_5AJ0_003 | 1/A2/2385:2389, 1/A2/2413:2418, 1/A2/2517:2518, 1/A2/2756:2763 | No text annotation Not in a motif group | ||
J4_5AJ0_004 | 1/A2/2388:2389, 1/A2/2413:2418, 1/A2/2517:2518, 1/A2/2756:2762 | No text annotation Not in a motif group | ||
J4_5AJ0_005 | 1/A2/2597:2598, 1/A2/2616:2621, 1/A2/2671:2677, 1/A2/2697:2698 | No text annotation Not in a motif group | ||
J4_5AJ0_006 | 1/A2/3605:3609, 1/A2/3621:3625, 1/A2/3661:3665, 1/A2/3792:3797 | No text annotation Not in a motif group | homologous J4_8C3A_006 NA | |
J4_5AJ0_007 | 1/A2/3667:3669, 1/A2/3723:3725, 1/A2/3742:3751, 1/A2/3785:3790 | No text annotation Not in a motif group | ||
J4_5AJ0_008 | 1/A2/4193:4197, 1/A2/4251:4255, 1/A2/4279:4281, 1/A2/4290:4292 | No text annotation Not in a motif group | homologous J4_8C3A_008 NA | |
J4_5AJ0_009 | 1/A2/4549:4552, 1/A2/4582:4583, 1/A2/4638:4640, 1/A2/4674:4677 | No text annotation Not in a motif group | ||
J4_5AJ0_010 | 1/B1/98:106, 1/B1/355:357, 1/B1/405:409, 1/B1/431:432 | No text annotation Not in a motif group | homologous J4_8C3A_021 NA | |
J4_5AJ0_011 | 1/B1/671:673, 1/B1/1032:1037, 1/B1/1078:1089, 1/B1/1160:1161 | No text annotation Not in a motif group | homologous J4_8P9A_022 NA | |
J4_5AJ0_012 | 1/Bv/7:10, 1/Bv/25:27, 1/Bv/43:49, 1/Bv/65:66 | No text annotation Not in a motif group | homologous J4_6UGG_002 NA | |
J4_5AJ0_013 | 1/Bw/7:10, 1/Bw/25:27, 1/Bw/43:52, 1/Bw/62:66 | No text annotation Not in a motif group | ||
J5_5AJ0_001 | 1/A2/19:21, 1/A3/35:42, 1/A3/101:106, 1/A3/113:114, 1/A3/136:138 | No text annotation Not in a motif group | homologous J5_8C3A_001 NA | |
J5_5AJ0_002 | 1/A2/111:118, 1/A2/151:158, 1/A2/269:277, 1/A2/298:304, 1/A2/321:324 | No text annotation Not in a motif group | ||
J5_5AJ0_003 | 1/A2/1318:1323, 1/A2/1498:1501, 1/A2/1640:1643, 1/A2/2267:2269, 1/A2/2324:2330 | No text annotation Not in a motif group | ||
J5_5AJ0_004 | 1/A2/2834:2842, 1/A2/2866:2867, 1/A2/3584:3585, 1/A2/3589:3597, 1/A2/3806:3808 | No text annotation Not in a motif group | homologous J5_8C3A_004 NA | |
J5_5AJ0_005 | 1/A2/3874:3881, 1/A2/4354:4362, 1/A2/4406:4415, 1/A2/4490:4496, 1/A2/4514:4519 | No text annotation Not in a motif group | ||
J5_5AJ0_006 | 1/A2/3891:3894, 1/A2/4150:4153, 1/A2/4166:4167, 1/A2/4189:4190, 1/A2/4337:4343 | No text annotation Not in a motif group | homologous J5_8C3A_006 NA | |
J5_5AJ0_007 | 1/B1/30:34, 1/B1/521:527, 1/B1/558:565, 1/B1/585:595, 1/B1/641:644 | No text annotation Not in a motif group | ||
J5_5AJ0_008 | 1/B1/53:57, 1/B1/88:97, 1/B1/433:436, 1/B1/457:459, 1/B1/470:474 | No text annotation Not in a motif group | ||
J6_5AJ0_001 | 1/A2/21:26, 1/A2/57:67, 1/A2/74:78, 1/A2/105:109, 1/A2/326:336, 1/A3/32:35 | No text annotation Not in a motif group | ||
J6_5AJ0_002 | 1/A2/1335:1338, 1/A2/1367:1371, 1/A2/1378:1382, 1/A2/1401:1404, 1/A2/1446:1448, 1/A2/1481:1486 | No text annotation Not in a motif group | ||
J6_5AJ0_003 | 1/A2/3891:3894, 1/A2/4150:4153, 1/A2/4166:4167, 1/A2/4189:4192, 1/A2/4293:4304, 1/A2/4332:4343 | No text annotation Not in a motif group | ||
J6_5AJ0_004 | 1/B1/682:691, 1/B1/739:744, 1/B1/797:801, 1/B1/864:877, 1/B1/910:922, 1/B1/1022:1023 | No text annotation Not in a motif group | ||
J6_5AJ0_005 | 1/B1/682:691, 1/B1/739:744, 1/B1/797:801, 1/B1/864:877, 1/B1/910:923, 1/B1/1019:1023 | No text annotation Not in a motif group | ||
J7_5AJ0_001 | 1/A2/1648:1653, 1/A2/1666:1667, 1/A2/1833:1836, 1/A2/1860:1865, 1/A2/1876:1880, 1/A2/2058:2059, 1/A2/2257:2262 | No text annotation Not in a motif group |
Problematic loops
# | loop id | Problem | Sequence |
---|---|---|---|
J3_5AJ0_015 | No text annotation |
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