5AJ0 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_5AJ0_001 | No text annotation | ||
| HL_5AJ0_002 | No text annotation | ||
| HL_5AJ0_003 | No text annotation | ||
| HL_5AJ0_004 | No text annotation | ||
| HL_5AJ0_005 | No text annotation | ||
| HL_5AJ0_006 | No text annotation | ||
| HL_5AJ0_007 | No text annotation | ||
| HL_5AJ0_008 | Pseudoknot geometry | ||
| HL_5AJ0_009 | GNRA | ||
| HL_5AJ0_010 | GNRA | ||
| HL_5AJ0_011 | Externally structured | ||
| HL_5AJ0_012 | Externally structured | ||
| HL_5AJ0_013 | No text annotation | ||
| HL_5AJ0_014 | No text annotation | ||
| HL_5AJ0_015 | Externally structured | ||
| HL_5AJ0_016 | T-loop with 2 stacked bulged bases | ||
| HL_5AJ0_017 | No text annotation | ||
| HL_5AJ0_123 | No text annotation | ||
| HL_5AJ0_018 | GNRA | ||
| HL_5AJ0_124 | No text annotation | ||
| HL_5AJ0_019 | No text annotation | ||
| HL_5AJ0_125 | No text annotation | ||
| HL_5AJ0_020 | No text annotation | ||
| HL_5AJ0_021 | UNCG variation | ||
| HL_5AJ0_022 | GNRA | ||
| HL_5AJ0_023 | No text annotation | ||
| HL_5AJ0_024 | No text annotation | ||
| HL_5AJ0_025 | Externally structured | ||
| HL_5AJ0_026 | GNRA variation | ||
| HL_5AJ0_027 | No text annotation | ||
| HL_5AJ0_028 | GNRA | ||
| HL_5AJ0_029 | No text annotation | ||
| HL_5AJ0_030 | No text annotation | ||
| HL_5AJ0_031 | No text annotation | ||
| HL_5AJ0_032 | No text annotation | ||
| HL_5AJ0_033 | GNRA | ||
| HL_5AJ0_034 | T-loop with 2 stacked bulged bases | ||
| HL_5AJ0_035 | Pseudoknot geometry with 3' bulge | ||
| HL_5AJ0_036 | GNRA variation | ||
| HL_5AJ0_037 | No text annotation | ||
| HL_5AJ0_038 | No text annotation | ||
| HL_5AJ0_039 | GNRA | ||
| HL_5AJ0_040 | GNRA | ||
| HL_5AJ0_041 | No text annotation | ||
| HL_5AJ0_042 | No text annotation | ||
| HL_5AJ0_043 | No text annotation | ||
| HL_5AJ0_126 | No text annotation | ||
| HL_5AJ0_044 | No text annotation | ||
| HL_5AJ0_045 | No text annotation | ||
| HL_5AJ0_046 | GNRA | ||
| HL_5AJ0_047 | UNCG | ||
| HL_5AJ0_048 | No text annotation | ||
| HL_5AJ0_049 | No text annotation | ||
| HL_5AJ0_050 | No text annotation | ||
| HL_5AJ0_051 | GNRA | ||
| HL_5AJ0_052 | GNRA | ||
| HL_5AJ0_127 | No text annotation | ||
| HL_5AJ0_053 | No text annotation | ||
| HL_5AJ0_054 | No text annotation | ||
| HL_5AJ0_055 | No text annotation | ||
| HL_5AJ0_056 | Mini UNCG | ||
| HL_5AJ0_057 | Mini UNCG | ||
| HL_5AJ0_058 | No text annotation | ||
| HL_5AJ0_059 | No text annotation | ||
| HL_5AJ0_060 | No text annotation | ||
| HL_5AJ0_061 | Pseudoknot geometry | ||
| HL_5AJ0_062 | No text annotation | ||
| HL_5AJ0_063 | GNRA | ||
| HL_5AJ0_064 | No text annotation | ||
| HL_5AJ0_065 | No text annotation | ||
| HL_5AJ0_066 | No text annotation | ||
| HL_5AJ0_067 | No text annotation | ||
| HL_5AJ0_068 | GNRA | ||
| HL_5AJ0_069 | GNRA | ||
| HL_5AJ0_070 | Ribsomal LSU H95 | ||
| HL_5AJ0_071 | No text annotation | ||
| HL_5AJ0_072 | No text annotation | ||
| HL_5AJ0_073 | No text annotation | ||
| HL_5AJ0_074 | No text annotation | ||
| HL_5AJ0_075 | No text annotation | ||
| HL_5AJ0_076 | No text annotation | ||
| HL_5AJ0_077 | No text annotation | ||
| HL_5AJ0_078 | No text annotation | ||
| HL_5AJ0_128 | No text annotation | ||
| HL_5AJ0_079 | No text annotation | ||
| HL_5AJ0_080 | GNRA | ||
| HL_5AJ0_081 | No text annotation | ||
| HL_5AJ0_082 | No text annotation | ||
| HL_5AJ0_083 | GNRA related | ||
| HL_5AJ0_084 | GNRA | ||
| HL_5AJ0_085 | No text annotation | ||
| HL_5AJ0_086 | T-loop with 1 bulged base | ||
| HL_5AJ0_087 | No text annotation | ||
| HL_5AJ0_088 | No text annotation | ||
| HL_5AJ0_089 | No text annotation | ||
| HL_5AJ0_090 | No text annotation | ||
| HL_5AJ0_091 | UNCG | ||
| HL_5AJ0_092 | No text annotation | ||
| HL_5AJ0_093 | No text annotation | ||
| HL_5AJ0_094 | No text annotation | ||
| HL_5AJ0_095 | GNRA variation | ||
| HL_5AJ0_096 | No text annotation | ||
| HL_5AJ0_097 | No text annotation | ||
| HL_5AJ0_098 | No text annotation | ||
| HL_5AJ0_099 | No text annotation | ||
| HL_5AJ0_100 | Pseudoknot geometry | ||
| HL_5AJ0_101 | No text annotation | ||
| HL_5AJ0_102 | GNRA | ||
| HL_5AJ0_103 | No text annotation | ||
| HL_5AJ0_104 | No text annotation | ||
| HL_5AJ0_105 | GNRA | ||
| HL_5AJ0_106 | GNRA | ||
| HL_5AJ0_107 | No text annotation | ||
| HL_5AJ0_108 | Anticodon loop related | ||
| HL_5AJ0_109 | GNRA | ||
| HL_5AJ0_110 | No text annotation | ||
| HL_5AJ0_111 | No text annotation | ||
| HL_5AJ0_112 | No text annotation | ||
| HL_5AJ0_113 | GNRA | ||
| HL_5AJ0_114 | No text annotation | ||
| HL_5AJ0_129 | No text annotation | ||
| HL_5AJ0_115 | No text annotation | ||
| HL_5AJ0_116 | GNRA variation | ||
| HL_5AJ0_117 | No text annotation | ||
| HL_5AJ0_118 | tRNA anticodon loop | ||
| HL_5AJ0_119 | T-loop with 2 stacked bulged bases | ||
| HL_5AJ0_120 | No text annotation | ||
| HL_5AJ0_121 | tRNA anticodon loop | ||
| HL_5AJ0_130 | No text annotation | ||
| HL_5AJ0_122 | T-loop with 2 stacked bulged bases |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_5AJ0_001 | Single bulged C | ||
| IL_5AJ0_002 | Single bulged U | ||
| IL_5AJ0_003 | Isolated cWH basepair | ||
| IL_5AJ0_004 | No text annotation | ||
| IL_5AJ0_005 | No text annotation | ||
| IL_5AJ0_006 | No text annotation | ||
| IL_5AJ0_007 | No text annotation | ||
| IL_5AJ0_008 | Isolated non-canonical cWW pair | ||
| IL_5AJ0_009 | Single stack bend | ||
| IL_5AJ0_010 | Isolated non-canonical cWW pair | ||
| IL_5AJ0_011 | Tandem non-canonical cWW pairs | ||
| IL_5AJ0_012 | No text annotation | ||
| IL_5AJ0_285 | No text annotation | ||
| IL_5AJ0_013 | No text annotation | ||
| IL_5AJ0_014 | Single stack bend | ||
| IL_5AJ0_015 | No text annotation | ||
| IL_5AJ0_016 | No text annotation | ||
| IL_5AJ0_017 | Single bulged A | ||
| IL_5AJ0_018 | Triple sheared with non-canonical cWW | ||
| IL_5AJ0_019 | No text annotation | ||
| IL_5AJ0_020 | Tandem non-canonical cWW pairs | ||
| IL_5AJ0_021 | Isolated non-canonical cWW pair | ||
| IL_5AJ0_312 | Isolated non-canonical cWW pair | ||
| IL_5AJ0_022 | No text annotation | ||
| IL_5AJ0_286 | No text annotation | ||
| IL_5AJ0_023 | No text annotation | ||
| IL_5AJ0_024 | Isolated non-canonical cWW pair | ||
| IL_5AJ0_287 | No text annotation | ||
| IL_5AJ0_025 | Single stack bend | ||
| IL_5AJ0_026 | Single stack bend | ||
| IL_5AJ0_288 | No text annotation | ||
| IL_5AJ0_027 | Self complementary | ||
| IL_5AJ0_028 | No text annotation | ||
| IL_5AJ0_289 | No text annotation | ||
| IL_5AJ0_029 | Isolated non-canonical cWW pair | ||
| IL_5AJ0_030 | No text annotation | ||
| IL_5AJ0_031 | Other IL | ||
| IL_5AJ0_032 | Single stack bend | ||
| IL_5AJ0_033 | Major groove platform | ||
| IL_5AJ0_034 | Single stack bend | ||
| IL_5AJ0_035 | Single bulged A | ||
| IL_5AJ0_036 | No text annotation | ||
| IL_5AJ0_290 | Multiple bulged bases | ||
| IL_5AJ0_037 | Single stack bend | ||
| IL_5AJ0_038 | Single bulged G | ||
| IL_5AJ0_039 | No text annotation | ||
| IL_5AJ0_040 | No text annotation | ||
| IL_5AJ0_041 | No text annotation | ||
| IL_5AJ0_042 | Isolated non-canonical cWW pair | ||
| IL_5AJ0_043 | Other IL | ||
| IL_5AJ0_313 | Single stack bend | ||
| IL_5AJ0_044 | No text annotation | ||
| IL_5AJ0_045 | Single stack bend | ||
| IL_5AJ0_046 | No text annotation | ||
| IL_5AJ0_047 | No text annotation | ||
| IL_5AJ0_291 | No text annotation | ||
| IL_5AJ0_314 | No text annotation | ||
| IL_5AJ0_048 | No text annotation | ||
| IL_5AJ0_049 | Tandem non-canonical cWW pairs with near WC pairs | ||
| IL_5AJ0_292 | No text annotation | ||
| IL_5AJ0_050 | Isolated non-canonical cWW pair | ||
| IL_5AJ0_293 | Single stack bend | ||
| IL_5AJ0_051 | Isolated non-canonical cWW pair | ||
| IL_5AJ0_052 | Isolated cWH basepair | ||
| IL_5AJ0_053 | No text annotation | ||
| IL_5AJ0_294 | No text annotation | ||
| IL_5AJ0_054 | Major groove intercalation | ||
| IL_5AJ0_055 | Triple sheared related | ||
| IL_5AJ0_056 | Double sheared with near cWW | ||
| IL_5AJ0_057 | Single bulged A | ||
| IL_5AJ0_058 | Isolated non-canonical cWW pair | ||
| IL_5AJ0_059 | Single stack bend with SAM intercalation | ||
| IL_5AJ0_060 | Isolated non-canonical cWW pair | ||
| IL_5AJ0_061 | No text annotation | ||
| IL_5AJ0_062 | Isolated non-canonical cWW pair | ||
| IL_5AJ0_295 | Single bulged G | ||
| IL_5AJ0_063 | Triple sheared | ||
| IL_5AJ0_064 | Major groove platform with extra cWW | ||
| IL_5AJ0_065 | Single bulged U | ||
| IL_5AJ0_066 | Multiple bulged bases | ||
| IL_5AJ0_067 | Isolated non-canonical cWW pair | ||
| IL_5AJ0_068 | No text annotation | ||
| IL_5AJ0_069 | No text annotation | ||
| IL_5AJ0_070 | Single bulged G | ||
| IL_5AJ0_071 | 5x5 Sarcin-Ricin with intercalated A; G-bulge | ||
| IL_5AJ0_072 | Minor groove platform | ||
| IL_5AJ0_073 | C-loop | ||
| IL_5AJ0_074 | Tandem non-canonical cWW pairs | ||
| IL_5AJ0_075 | Isolated non-canonical cWW pair | ||
| IL_5AJ0_076 | Major groove platform with extra cWW | ||
| IL_5AJ0_077 | No text annotation | ||
| IL_5AJ0_078 | Tandem non-canonical cWW pairs | ||
| IL_5AJ0_079 | Single bulged A | ||
| IL_5AJ0_080 | Isolated non-canonical cWW pair | ||
| IL_5AJ0_081 | No text annotation | ||
| IL_5AJ0_082 | UAA/GAN | ||
| IL_5AJ0_083 | No text annotation | ||
| IL_5AJ0_084 | No text annotation | ||
| IL_5AJ0_085 | No text annotation | ||
| IL_5AJ0_086 | No text annotation | ||
| IL_5AJ0_087 | Single bulged U | ||
| IL_5AJ0_088 | Isolated non-canonical cWW pair | ||
| IL_5AJ0_315 | Kink-turn | ||
| IL_5AJ0_089 | No text annotation | ||
| IL_5AJ0_090 | Isolated cWS basepair | ||
| IL_5AJ0_091 | Isolated non-canonical cWW pair | ||
| IL_5AJ0_092 | Isolated non-canonical cWW pair | ||
| IL_5AJ0_093 | Isolated cWS basepair | ||
| IL_5AJ0_094 | Single bulged A | ||
| IL_5AJ0_095 | Kink-turn | ||
| IL_5AJ0_096 | Single bulged A | ||
| IL_5AJ0_097 | 7x6 Sarcin-Ricin; G-bulge | ||
| IL_5AJ0_098 | Major groove platform; stack outside cWW | ||
| IL_5AJ0_099 | No text annotation | ||
| IL_5AJ0_100 | UAA/GAN | ||
| IL_5AJ0_101 | Single stack bend | ||
| IL_5AJ0_102 | Isolated cWH basepair | ||
| IL_5AJ0_103 | No text annotation | ||
| IL_5AJ0_104 | Isolated non-canonical cWW pair | ||
| IL_5AJ0_105 | Single bulged U | ||
| IL_5AJ0_106 | Triple sheared | ||
| IL_5AJ0_107 | Isolated non-canonical cWW pair | ||
| IL_5AJ0_108 | Single bulged C | ||
| IL_5AJ0_109 | Single stack bend | ||
| IL_5AJ0_110 | Isolated tHS basepair with bulges | ||
| IL_5AJ0_296 | Single bulged G | ||
| IL_5AJ0_111 | Isolated cWS basepair | ||
| IL_5AJ0_112 | Kink-turn | ||
| IL_5AJ0_113 | No text annotation | ||
| IL_5AJ0_114 | Isolated tWW turn | ||
| IL_5AJ0_115 | Major groove platform; stack outside cWW | ||
| IL_5AJ0_297 | No text annotation | ||
| IL_5AJ0_116 | Intercalated tWH | ||
| IL_5AJ0_117 | No text annotation | ||
| IL_5AJ0_118 | Isolated non-canonical cWW pair | ||
| IL_5AJ0_119 | No text annotation | ||
| IL_5AJ0_120 | Single bulged A | ||
| IL_5AJ0_121 | Kink-turn related | ||
| IL_5AJ0_122 | Major groove intercalation | ||
| IL_5AJ0_123 | Major groove intercalation | ||
| IL_5AJ0_124 | No text annotation | ||
| IL_5AJ0_125 | No text annotation | ||
| IL_5AJ0_126 | Single stack bend | ||
| IL_5AJ0_127 | Bulged stacked bases | ||
| IL_5AJ0_128 | No text annotation | ||
| IL_5AJ0_129 | No text annotation | ||
| IL_5AJ0_130 | Major groove platform with intercalation | ||
| IL_5AJ0_131 | Single bulged U | ||
| IL_5AJ0_132 | Minor groove platform | ||
| IL_5AJ0_133 | No text annotation | ||
| IL_5AJ0_134 | Isolated cWH basepair | ||
| IL_5AJ0_135 | Minor groove platform | ||
| IL_5AJ0_136 | Isolated non-canonical cWW pair | ||
| IL_5AJ0_137 | No text annotation | ||
| IL_5AJ0_316 | No text annotation | ||
| IL_5AJ0_138 | No text annotation | ||
| IL_5AJ0_139 | No text annotation | ||
| IL_5AJ0_140 | No text annotation | ||
| IL_5AJ0_141 | No text annotation | ||
| IL_5AJ0_142 | Single bulged A | ||
| IL_5AJ0_143 | Isolated tHS basepair with bulges | ||
| IL_5AJ0_144 | Tandem non-canonical cWW pairs | ||
| IL_5AJ0_145 | Single stack bend | ||
| IL_5AJ0_146 | Major groove platform | ||
| IL_5AJ0_147 | Isolated non-canonical cWW pair | ||
| IL_5AJ0_148 | Major groove platform | ||
| IL_5AJ0_149 | Major groove minor groove platform with extra cWW | ||
| IL_5AJ0_150 | No text annotation | ||
| IL_5AJ0_151 | Major groove platform | ||
| IL_5AJ0_152 | Isolated non-canonical cWW with bulges | ||
| IL_5AJ0_153 | Multiple bulged bases | ||
| IL_5AJ0_154 | Isolated non-canonical cWW pair | ||
| IL_5AJ0_298 | No text annotation | ||
| IL_5AJ0_155 | No text annotation | ||
| IL_5AJ0_156 | Isolated non-canonical cWW pair | ||
| IL_5AJ0_157 | Single bulged A | ||
| IL_5AJ0_158 | No text annotation | ||
| IL_5AJ0_159 | Double sheared | ||
| IL_5AJ0_160 | Isolated non-canonical cWW pair | ||
| IL_5AJ0_161 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_5AJ0_162 | No text annotation | ||
| IL_5AJ0_163 | UAA/GAN related | ||
| IL_5AJ0_164 | Isolated non-canonical cWW contact | ||
| IL_5AJ0_165 | Multiple bulged bases | ||
| IL_5AJ0_299 | Isolated non-canonical cWW pair | ||
| IL_5AJ0_166 | UAA/GAN with extra cWW | ||
| IL_5AJ0_167 | No text annotation | ||
| IL_5AJ0_168 | No text annotation | ||
| IL_5AJ0_169 | Single stack bend | ||
| IL_5AJ0_170 | Tandem non-canonical cWW pairs | ||
| IL_5AJ0_171 | Triple non-canonical cWW pairs | ||
| IL_5AJ0_172 | No text annotation | ||
| IL_5AJ0_300 | No text annotation | ||
| IL_5AJ0_173 | Isolated non-canonical cWW pair | ||
| IL_5AJ0_174 | Minor groove platform | ||
| IL_5AJ0_175 | Tandem non-canonical cWW pairs | ||
| IL_5AJ0_176 | Isolated non-canonical cWW pair | ||
| IL_5AJ0_177 | Single bulged U | ||
| IL_5AJ0_178 | Isolated non-canonical cWW pair | ||
| IL_5AJ0_179 | No text annotation | ||
| IL_5AJ0_180 | Single bulged U | ||
| IL_5AJ0_181 | Double sheared; A in syn | ||
| IL_5AJ0_301 | No text annotation | ||
| IL_5AJ0_182 | Isolated non-canonical cWW pair | ||
| IL_5AJ0_183 | Isolated non-canonical cWW pair | ||
| IL_5AJ0_184 | Single bulged A | ||
| IL_5AJ0_185 | Minor groove platform related | ||
| IL_5AJ0_186 | No text annotation | ||
| IL_5AJ0_187 | Symmetric double minor groove platform | ||
| IL_5AJ0_188 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_5AJ0_189 | Isolated non-canonical cWW pair | ||
| IL_5AJ0_190 | Isolated non-canonical cWW pair | ||
| IL_5AJ0_191 | Isolated non-canonical cWW pair | ||
| IL_5AJ0_192 | Isolated non-canonical cWW pair | ||
| IL_5AJ0_193 | Double sheared | ||
| IL_5AJ0_194 | No text annotation | ||
| IL_5AJ0_195 | Minor groove platform | ||
| IL_5AJ0_196 | No text annotation | ||
| IL_5AJ0_197 | No text annotation | ||
| IL_5AJ0_198 | Isolated non-canonical cWW pair | ||
| IL_5AJ0_199 | Isolated non-canonical cWW pair | ||
| IL_5AJ0_200 | Multiple bulged bases | ||
| IL_5AJ0_201 | No text annotation | ||
| IL_5AJ0_202 | No text annotation | ||
| IL_5AJ0_203 | Tandem non-canonical cWW pairs | ||
| IL_5AJ0_204 | Double sheared with non-canonical cWW | ||
| IL_5AJ0_205 | Isolated cWS basepair | ||
| IL_5AJ0_206 | Single bulged A | ||
| IL_5AJ0_207 | Isolated non-canonical cWW pair | ||
| IL_5AJ0_208 | No text annotation | ||
| IL_5AJ0_209 | Kink-turn with non-sequential stacking | ||
| IL_5AJ0_210 | No text annotation | ||
| IL_5AJ0_211 | No text annotation | ||
| IL_5AJ0_212 | Isolated cWH basepair | ||
| IL_5AJ0_213 | Isolated near basepair | ||
| IL_5AJ0_214 | C-loop | ||
| IL_5AJ0_302 | Isolated cWH basepair | ||
| IL_5AJ0_215 | Tandem non-canonical cWW pairs | ||
| IL_5AJ0_216 | Isolated non-canonical cWW pair | ||
| IL_5AJ0_217 | Single bulged A | ||
| IL_5AJ0_218 | No text annotation | ||
| IL_5AJ0_219 | No text annotation | ||
| IL_5AJ0_317 | SSU/LSU pseudoknot | ||
| IL_5AJ0_220 | Single bulged U | ||
| IL_5AJ0_221 | Kink-turn related | ||
| IL_5AJ0_222 | Isolated non-canonical cWW pair | ||
| IL_5AJ0_223 | No text annotation | ||
| IL_5AJ0_224 | Isolated non-canonical cWW pair | ||
| IL_5AJ0_225 | tSH-tHW-tHS | ||
| IL_5AJ0_226 | Isolated non-canonical cWW pair | ||
| IL_5AJ0_227 | Major groove minor groove platform; mini C-loop | ||
| IL_5AJ0_228 | Major groove minor groove platform with extra cWW | ||
| IL_5AJ0_303 | Major groove minor groove platform; mini C-loop | ||
| IL_5AJ0_229 | Isolated non-canonical cWW pair | ||
| IL_5AJ0_230 | No text annotation | ||
| IL_5AJ0_231 | No text annotation | ||
| IL_5AJ0_232 | Isolated cWH basepair | ||
| IL_5AJ0_233 | Major groove platform; stack outside cWW | ||
| IL_5AJ0_234 | Tandem non-canonical cWW pairs | ||
| IL_5AJ0_304 | Single bulged U | ||
| IL_5AJ0_235 | Tandem non-canonical cWW pairs | ||
| IL_5AJ0_236 | Tandem non-canonical cWW pairs | ||
| IL_5AJ0_237 | Tandem non-canonical cWW pairs | ||
| IL_5AJ0_238 | Kink-turn | ||
| IL_5AJ0_239 | Other IL | ||
| IL_5AJ0_240 | tSH-tHW-tHS | ||
| IL_5AJ0_241 | No text annotation | ||
| IL_5AJ0_242 | Tandem non-canonical cWW pairs | ||
| IL_5AJ0_243 | Isolated non-canonical cWW pair | ||
| IL_5AJ0_244 | Single bulged U | ||
| IL_5AJ0_245 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | ||
| IL_5AJ0_246 | Isolated non-canonical cWW pair | ||
| IL_5AJ0_247 | Single bulged G | ||
| IL_5AJ0_248 | Isolated non-canonical cWW pair | ||
| IL_5AJ0_249 | C-loop | ||
| IL_5AJ0_305 | No text annotation | ||
| IL_5AJ0_250 | Isolated non-canonical cWW pair | ||
| IL_5AJ0_251 | Minor groove platform | ||
| IL_5AJ0_252 | Isolated non-canonical cWW pair | ||
| IL_5AJ0_253 | Isolated non-canonical cWW pair | ||
| IL_5AJ0_306 | No text annotation | ||
| IL_5AJ0_254 | No text annotation | ||
| IL_5AJ0_255 | No text annotation | ||
| IL_5AJ0_256 | Single bulged U | ||
| IL_5AJ0_257 | Isolated cWS basepair | ||
| IL_5AJ0_307 | No text annotation | ||
| IL_5AJ0_308 | No text annotation | ||
| IL_5AJ0_309 | No text annotation | ||
| IL_5AJ0_258 | Minor groove platform with extra cWW | ||
| IL_5AJ0_310 | Minor groove platform | ||
| IL_5AJ0_259 | Single bulged A | ||
| IL_5AJ0_260 | Isolated cWH basepair | ||
| IL_5AJ0_261 | Minor groove platform | ||
| IL_5AJ0_262 | Tandem non-canonical cWW pairs | ||
| IL_5AJ0_263 | No text annotation | ||
| IL_5AJ0_264 | No text annotation | ||
| IL_5AJ0_265 | Tandem non-canonical cWW pairs | ||
| IL_5AJ0_266 | Isolated non-canonical cWW pair | ||
| IL_5AJ0_311 | No text annotation | ||
| IL_5AJ0_267 | No text annotation | ||
| IL_5AJ0_268 | Isolated non-canonical cWW pair | ||
| IL_5AJ0_269 | No text annotation | ||
| IL_5AJ0_270 | No text annotation | ||
| IL_5AJ0_271 | No text annotation | ||
| IL_5AJ0_272 | Isolated non-canonical cWW pair | ||
| IL_5AJ0_273 | Non canonical cWW and near pair | ||
| IL_5AJ0_274 | Isolated non-canonical cWW pair | ||
| IL_5AJ0_275 | Double sheared | ||
| IL_5AJ0_276 | Single bulged U | ||
| IL_5AJ0_277 | Isolated non-canonical cWW pair | ||
| IL_5AJ0_278 | Double sheared | ||
| IL_5AJ0_279 | Isolated non-canonical cWW pair | ||
| IL_5AJ0_280 | Isolated non-canonical cWW pair | ||
| IL_5AJ0_281 | Triple sheared | ||
| IL_5AJ0_282 | No text annotation | ||
| IL_5AJ0_283 | Isolated non-canonical cWW pair | ||
| IL_5AJ0_284 | Tandem non-canonical cWW pairs |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_5AJ0_001 | No text annotation | ||
| J3_5AJ0_026 | No text annotation | ||
| J3_5AJ0_027 | No text annotation | ||
| J3_5AJ0_028 | No text annotation | ||
| J3_5AJ0_002 | No text annotation | ||
| J3_5AJ0_029 | No text annotation | ||
| J3_5AJ0_042 | No text annotation | ||
| J3_5AJ0_030 | No text annotation | ||
| J3_5AJ0_003 | No text annotation | ||
| J3_5AJ0_004 | No text annotation | ||
| J3_5AJ0_031 | No text annotation | ||
| J3_5AJ0_005 | No text annotation | ||
| J3_5AJ0_006 | No text annotation | ||
| J3_5AJ0_007 | No text annotation | ||
| J3_5AJ0_032 | No text annotation | ||
| J3_5AJ0_033 | No text annotation | ||
| J3_5AJ0_008 | No text annotation | ||
| J3_5AJ0_034 | No text annotation | ||
| J3_5AJ0_035 | No text annotation | ||
| J3_5AJ0_009 | Kink-turn 3-way junction | ||
| J3_5AJ0_010 | No text annotation | ||
| J3_5AJ0_036 | No text annotation | ||
| J3_5AJ0_011 | No text annotation | ||
| J3_5AJ0_012 | No text annotation | ||
| J3_5AJ0_037 | No text annotation | ||
| J3_5AJ0_013 | No text annotation | ||
| J3_5AJ0_014 | No text annotation | ||
| J3_5AJ0_038 | No text annotation | ||
| J3_5AJ0_015 | No text annotation | ||
| J3_5AJ0_039 | No text annotation | ||
| J3_5AJ0_040 | No text annotation | ||
| J3_5AJ0_043 | No text annotation | ||
| J3_5AJ0_044 | No text annotation | ||
| J3_5AJ0_016 | No text annotation | ||
| J3_5AJ0_017 | No text annotation | ||
| J3_5AJ0_018 | No text annotation | ||
| J3_5AJ0_019 | No text annotation | ||
| J3_5AJ0_020 | No text annotation | ||
| J3_5AJ0_021 | No text annotation | ||
| J3_5AJ0_022 | No text annotation | ||
| J3_5AJ0_023 | No text annotation | ||
| J3_5AJ0_041 | No text annotation | ||
| J3_5AJ0_024 | No text annotation | ||
| J3_5AJ0_025 | No text annotation | ||
| J4_5AJ0_001 | No text annotation | ||
| J4_5AJ0_014 | No text annotation | ||
| J4_5AJ0_002 | No text annotation | ||
| J4_5AJ0_003 | No text annotation | ||
| J4_5AJ0_004 | No text annotation | ||
| J4_5AJ0_005 | No text annotation | ||
| J4_5AJ0_006 | No text annotation | ||
| J4_5AJ0_007 | No text annotation | ||
| J4_5AJ0_008 | No text annotation | ||
| J4_5AJ0_009 | No text annotation | ||
| J4_5AJ0_010 | No text annotation | ||
| J4_5AJ0_011 | No text annotation | ||
| J4_5AJ0_012 | tRNA junction | ||
| J4_5AJ0_013 | No text annotation | ||
| J5_5AJ0_001 | No text annotation | ||
| J5_5AJ0_002 | No text annotation | ||
| J5_5AJ0_003 | No text annotation | ||
| J5_5AJ0_004 | No text annotation | ||
| J5_5AJ0_005 | No text annotation | ||
| J5_5AJ0_006 | No text annotation | ||
| J5_5AJ0_007 | No text annotation | ||
| J5_5AJ0_008 | No text annotation | ||
| J5_5AJ0_009 | No text annotation | ||
| J6_5AJ0_001 | No text annotation | ||
| J6_5AJ0_002 | No text annotation | ||
| J6_5AJ0_003 | No text annotation | ||
| J6_5AJ0_004 | No text annotation | ||
| J6_5AJ0_005 | No text annotation | ||
| J7_5AJ0_001 | No text annotation |
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