HL_5AJ0_008

3D structure

PDB id

5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo electron microscopy of actively translating human polysomes (POST state).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGUAAACUCC

Length

10 nucleotides

Bulged bases

5AJ0|1|A2|G|309, 5AJ0|1|A2|U|310

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_41542.1

Basepair signature

cWW-R-R-R-R-R

Number of instances in this motif group

30

Unit IDs

5AJ0|1|A2|G|308
5AJ0|1|A2|G|309
5AJ0|1|A2|U|310
5AJ0|1|A2|A|311
5AJ0|1|A2|A|312
5AJ0|1|A2|A|313
5AJ0|1|A2|C|314
5AJ0|1|A2|U|315
5AJ0|1|A2|C|316
5AJ0|1|A2|C|317

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AL

60S ribosomal protein L13

Chain AN

60S ribosomal protein L15

Chain Aa

60S ribosomal protein L27a

Chain Ai

60S ribosomal protein L36

Chain Ao

60S ribosomal protein L36a