HL_5AJ0_017

3D structure

PDB id

5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo electron microscopy of actively translating human polysomes (POST state).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CUCGCACGAAAG

Length

12 nucleotides

Bulged bases

5AJ0|1|A2|C|1350, 5AJ0|1|A2|A|1354

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39911.1

Basepair signature

cWW-cWW-R-R-R-R-R

Number of instances in this motif group

1

Unit IDs

5AJ0|1|A2|C|1346
5AJ0|1|A2|U|1347
5AJ0|1|A2|C|1348
5AJ0|1|A2|G|1349
5AJ0|1|A2|C|1350
5AJ0|1|A2|A|1351
5AJ0|1|A2|C|1352
5AJ0|1|A2|G|1353
5AJ0|1|A2|A|1354
5AJ0|1|A2|A|1355
5AJ0|1|A2|A|1356
5AJ0|1|A2|G|1357

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain A3

5.8S ribosomal RNA; 5.8S rRNA

Chain AC

60S ribosomal protein L4

Chain AL

60S ribosomal protein L13

Chain AN

60S ribosomal protein L15

Chain AY

60S ribosomal protein L26