HL_5AJ0_078

3D structure

PDB id

5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo electron microscopy of actively translating human polysomes (POST state).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGGUUCCUCCC

Length

11 nucleotides

Bulged bases

5AJ0|1|A3|U|124, 5AJ0|1|A3|C|125, 5AJ0|1|A3|C|128

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_85081.1

Basepair signature

cWW-R-R-R-R-R

Number of instances in this motif group

1

Unit IDs

5AJ0|1|A3|G|120
5AJ0|1|A3|G|121
5AJ0|1|A3|G|122
5AJ0|1|A3|U|123
5AJ0|1|A3|U|124
5AJ0|1|A3|C|125
5AJ0|1|A3|C|126
5AJ0|1|A3|U|127
5AJ0|1|A3|C|128
5AJ0|1|A3|C|129
5AJ0|1|A3|C|130

Current chains

Chain A3

5.8S ribosomal RNA

Nearby chains

Chain A2

Large subunit ribosomal RNA; LSU rRNA

Chain AX

60S ribosomal protein L23a