HL_5AJ0_088

3D structure

PDB id

5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo electron microscopy of actively translating human polysomes (POST state).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GUCGCCGUGCC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5AJ0_088 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.3985

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27483.1

Basepair signature

cWW-F

Number of instances in this motif group

2

Unit IDs

5AJ0|1|B1|G|377
5AJ0|1|B1|U|378
5AJ0|1|B1|C|379
5AJ0|1|B1|G|380
5AJ0|1|B1|C|381
5AJ0|1|B1|C|382
5AJ0|1|B1|G|383
5AJ0|1|B1|U|384
5AJ0|1|B1|G|385
5AJ0|1|B1|C|386
5AJ0|1|B1|C|387

Current chains

Chain B1

18S ribosomal RNA

Nearby chains

Chain BI

40S ribosomal protein S8

Chain BL

40S ribosomal protein S11