HL_5AJ0_091

3D structure

PDB id

5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo electron microscopy of actively translating human polysomes (POST state).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CCAAGG

Length

6 nucleotides

Bulged bases

5AJ0|1|B1|A|464

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5AJ0_091 not in the Motif Atlas

Homologous match to HL_4V88_196

Geometric discrepancy: 0.275

The information below is about HL_4V88_196

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

5AJ0|1|B1|C|462
5AJ0|1|B1|C|463
5AJ0|1|B1|A|464
5AJ0|1|B1|A|465
5AJ0|1|B1|G|466
5AJ0|1|B1|G|467

Current chains

Chain B1

18S ribosomal RNA

Nearby chains

Chain AV

60S ribosomal protein L23

Chain BG

40S ribosomal protein S6