3D structure

PDB id
5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo electron microscopy of actively translating human polysomes (POST state).
Experimental method
ELECTRON MICROSCOPY
Resolution
3.5 Å

Loop

Sequence
CUUUCG
Length
6 nucleotides
Bulged bases
5AJ0|1|B1|U|541, 5AJ0|1|B1|C|543
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_5AJ0_093 not in the Motif Atlas
Geometric match to HL_5NFV_001
Geometric discrepancy: 0.3298
The information below is about HL_5NFV_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_69752.2
Basepair signature
cWW-F
Number of instances in this motif group
7

Unit IDs

5AJ0|1|B1|C|539
5AJ0|1|B1|U|540
5AJ0|1|B1|U|541
5AJ0|1|B1|U|542
5AJ0|1|B1|C|543
5AJ0|1|B1|G|544

Current chains

Chain B1
18S ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:


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