3D structure

PDB id
5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo electron microscopy of actively translating human polysomes (POST state).
Experimental method
ELECTRON MICROSCOPY
Resolution
3.5 Å

Loop

Sequence
CCCGAGCCG
Length
9 nucleotides
Bulged bases
5AJ0|1|B1|G|836, 5AJ0|1|B1|C|840
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

5AJ0|1|B1|C|833
5AJ0|1|B1|C|834
5AJ0|1|B1|C|835
5AJ0|1|B1|G|836
5AJ0|1|B1|A|837
5AJ0|1|B1|G|838
5AJ0|1|B1|C|839
5AJ0|1|B1|C|840
5AJ0|1|B1|G|841

Current chains

Chain B1
18S ribosomal RNA

Nearby chains

Chain BE
40S ribosomal protein S4, Y isoform 1
Chain BJ
40S ribosomal protein S9
Chain BY
40S ribosomal protein S24

Coloring options:

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