HL_5AJ0_111

3D structure

PDB id

5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo electron microscopy of actively translating human polysomes (POST state).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CCCCCGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5AJ0_111 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.2937

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.1

Basepair signature

cWW-cWW

Number of instances in this motif group

2

Unit IDs

5AJ0|1|B1|C|1415
5AJ0|1|B1|C|1416
5AJ0|1|B1|C|1417
5AJ0|1|B1|C|1418
5AJ0|1|B1|C|1419
5AJ0|1|B1|G|1420
5AJ0|1|B1|A|1421
5AJ0|1|B1|G|1422

Current chains

Chain B1

18S ribosomal RNA

Nearby chains

Chain BQ

40S ribosomal protein S16

Chain BT

40S ribosomal protein S19