HL_5AJ0_114

3D structure

PDB id

5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo electron microscopy of actively translating human polysomes (POST state).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GAUUGCAAUUAUUC

Length

14 nucleotides

Bulged bases

5AJ0|1|B1|U|1621, 5AJ0|1|B1|U|1622, 5AJ0|1|B1|A|1623

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5AJ0|1|B1|G|1613
5AJ0|1|B1|A|1614
5AJ0|1|B1|U|1615
5AJ0|1|B1|U|1616
5AJ0|1|B1|G|1617
5AJ0|1|B1|C|1618
5AJ0|1|B1|A|1619
5AJ0|1|B1|A|1620
5AJ0|1|B1|U|1621
5AJ0|1|B1|U|1622
5AJ0|1|B1|A|1623
5AJ0|1|B1|U|1624
5AJ0|1|B1|U|1625
5AJ0|1|B1|C|1626

Current chains

Chain B1

18S ribosomal RNA

Nearby chains

Chain BP

40S ribosomal protein S15

Chain BS

40S ribosomal protein S18

Chain BT

40S ribosomal protein S19

Chain Bd

40S ribosomal protein S29