HL_5AJ0_115

3D structure

PDB id

5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo electron microscopy of actively translating human polysomes (POST state).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GUCAUAAGC

Length

9 nucleotides

Bulged bases

5AJ0|1|B1|G|1665

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5AJ0_115 not in the Motif Atlas

Homologous match to HL_4V88_220

Geometric discrepancy: 0.3653

The information below is about HL_4V88_220

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01927.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

5AJ0|1|B1|G|1658
5AJ0|1|B1|U|1659
5AJ0|1|B1|C|1660
5AJ0|1|B1|A|1661
5AJ0|1|B1|U|1662
5AJ0|1|B1|A|1663
5AJ0|1|B1|A|1664
5AJ0|1|B1|G|1665
5AJ0|1|B1|C|1666

Current chains

Chain B1

18S ribosomal RNA

Nearby chains

Chain BQ

40S ribosomal protein S16

Chain BS

40S ribosomal protein S18

Chain BT

40S ribosomal protein S19

Chain BU

40S ribosomal protein S20

Chain Bd

40S ribosomal protein S29