HL_5AJ0_120

3D structure

PDB id

5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo electron microscopy of actively translating human polysomes (POST state).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CAGUCGGUAG

Length

10 nucleotides

Bulged bases

5AJ0|1|Bw|U|16, 5AJ0|1|Bw|C|17, 5AJ0|1|Bw|G|18, 5AJ0|1|Bw|G|19, 5AJ0|1|Bw|U|20

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5AJ0_120 not in the Motif Atlas

Homologous match to HL_4LCK_001

Geometric discrepancy: 0.3023

The information below is about HL_4LCK_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5AJ0|1|Bw|C|13
5AJ0|1|Bw|A|14
5AJ0|1|Bw|G|15
5AJ0|1|Bw|U|16
5AJ0|1|Bw|C|17
5AJ0|1|Bw|G|18
5AJ0|1|Bw|G|19
5AJ0|1|Bw|U|20
5AJ0|1|Bw|A|21
5AJ0|1|Bw|G|22

Current chains

Chain Bw

tRNA

Nearby chains

Chain A2

Large subunit ribosomal RNA; LSU rRNA