HL_5AJ0_122
3D structure
- PDB id
- 5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo electron microscopy of actively translating human polysomes (POST state).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- GUUCGAUUC
- Length
- 9 nucleotides
- Bulged bases
- 5AJ0|1|Bw|C|56, 5AJ0|1|Bw|G|57
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5AJ0_122 not in the Motif Atlas
- Homologous match to HL_3WFS_003
- Geometric discrepancy: 0.3338
- The information below is about HL_3WFS_003
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_28252.9
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 141
Unit IDs
5AJ0|1|Bw|G|53
5AJ0|1|Bw|U|54
5AJ0|1|Bw|U|55
5AJ0|1|Bw|C|56
5AJ0|1|Bw|G|57
5AJ0|1|Bw|A|58
5AJ0|1|Bw|U|59
5AJ0|1|Bw|U|60
5AJ0|1|Bw|C|61
Current chains
- Chain Bw
- tRNA
Nearby chains
- Chain A2
- Large subunit ribosomal RNA; LSU rRNA
- Chain Au
- 60S ribosomal protein L10a
Coloring options: