HL_5AJ3_011

3D structure

PDB id

5AJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the small subunit of the mammalian mitoribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GAUUAGAUACC

Length

11 nucleotides

Bulged bases

5AJ3|1|A|U|433

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56205.1

Basepair signature

cWW-R-tSH-R-R-R-R

Number of instances in this motif group

26

Unit IDs

5AJ3|1|A|G|426
5AJ3|1|A|A|427
5AJ3|1|A|U|428
5AJ3|1|A|U|429
5AJ3|1|A|A|430
5AJ3|1|A|G|431
5AJ3|1|A|A|432
5AJ3|1|A|U|433
5AJ3|1|A|A|434
5AJ3|1|A|C|435
5AJ3|1|A|C|436

Current chains

Chain A

MITORIBOSOMAL 12S RRNA

Nearby chains

Chain G

MITORIBOSOMAL PROTEIN US7M, MRPS7

Chain K

MITORIBOSOMAL PROTEIN US11M, MRPS11

Chain U

MITORIBOSOMAL PROTEIN BS21M, MRPS21

Chain V

P-SITE AND A-SITE TRNA

Chain X

MRNA