HL_5AJ3_014

3D structure

PDB id

5AJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the small subunit of the mammalian mitoribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GAUAAACCCC

Length

10 nucleotides

Bulged bases

5AJ3|1|A|C|576

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_62686.1

Basepair signature

cWW-R-R-R-R-R-R

Number of instances in this motif group

10

Unit IDs

5AJ3|1|A|G|568
5AJ3|1|A|A|569
5AJ3|1|A|U|570
5AJ3|1|A|A|571
5AJ3|1|A|A|572
5AJ3|1|A|A|573
5AJ3|1|A|C|574
5AJ3|1|A|C|575
5AJ3|1|A|C|576
5AJ3|1|A|C|577

Current chains

Chain A

MITORIBOSOMAL 12S RRNA

Nearby chains

Chain I

MITORIBOSOMAL PROTEIN US9M, MRPS9

Chain J

MITORIBOSOMAL PROTEIN US10M, MRPS10

Chain V

P-SITE AND A-SITE TRNA

Chain Y

P-SITE AND A-SITE TRNA