HL_5AJ3_020

3D structure

PDB id

5AJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the small subunit of the mammalian mitoribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GAAUAGAGUGC

Length

11 nucleotides

Bulged bases

5AJ3|1|A|U|808

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_22130.1

Basepair signature

cWW-cWW-R-R-R-R-R

Number of instances in this motif group

7

Unit IDs

5AJ3|1|A|G|800
5AJ3|1|A|A|801
5AJ3|1|A|A|802
5AJ3|1|A|U|803
5AJ3|1|A|A|804
5AJ3|1|A|G|805
5AJ3|1|A|A|806
5AJ3|1|A|G|807
5AJ3|1|A|U|808
5AJ3|1|A|G|809
5AJ3|1|A|C|810

Current chains

Chain A

MITORIBOSOMAL 12S RRNA

Nearby chains

Chain I

MITORIBOSOMAL PROTEIN US9M, MRPS9

Chain J

MITORIBOSOMAL PROTEIN US10M, MRPS10

Chain N

MITORIBOSOMAL PROTEIN US14M, MRPS14

Chain i

MITORIBOSOMAL PROTEIN MS33, MRPS33