Motif HL_22130.1 Version HL_22130.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 1-10 | 2-9 | 3-8 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4V4Q_133 | 4V4Q | 0.6433 | 1 | CA | SSU rRNA | G | 1356 | A | 1357 | U | 1358 | C | 1359 | A | 1360 | G | 1361 | A | 1362 | A | 1363 | G | 1365 | C | 1366 | cWW | cWW | tWW |
| 2 | HL_3J9M_058 | 3J9M | 0.4260 | 1 | AA | SSU rRNA | G | 1440 | A | 1441 | G | 1442 | U | 1443 | A | 1444 | G | 1445 | A | 1446 | G | 1447 | G | 1449 | C | 1450 | cWW | ncWW | |
| 3 | HL_5AJ3_020 | 5AJ3 | 0.0000 | 1 | A | SSU rRNA | G | 800 | A | 801 | A | 802 | U | 803 | A | 804 | G | 805 | A | 806 | G | 807 | G | 809 | C | 810 | cWW | cWW | |
| 4 | HL_3J9W_030 | 3J9W | 0.4225 | 1 | AA | SSU rRNA | G | 1365 | A | 1366 | U | 1367 | C | 1368 | A | 1369 | G | 1370 | C | 1371 | A | 1372 | G | 1374 | C | 1375 | cWW | cWW | ntWH |
| 5 | HL_5AJ0_043 | 5AJ0 | 0.7763 | 1 | A2 | LSU rRNA | G | 2682 | C | 2683 | G | 2684 | G | 2685 | U | 2686 | U | 2687 | C | 2688 | C | 2689 | G | 2691 | C | 2692 | cWW | ncWW | |
| 6 | HL_4V91_037 | 4V91 | 0.7847 | 1 | 1 | LSU rRNA | A | 1679 | G | 1680 | U | 1681 | U | 1682 | A | 1683 | U | 1684 | C | 1685 | U | 1686 | U | 1688 | U | 1689 | cWW | ncWW | |
| 7 | HL_3J7P_038 | 3J7P | 0.8413 | 1 | 5 | LSU rRNA | A | 2623 | G | 2624 | U | 2625 | U | 2626 | C | 2627 | U | 2628 | C | 2629 | U | 2630 | U | 2632 | U | 2633 |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAUCAGAAUGC | 1 |
| GAGUAGAGUGC | 1 |
| GAAUAGAGUGC | 1 |
| GAUCAGCAUGC | 1 |
| GCGGUUCCGGC | 1 |
| AGUUAUCUUUU | 1 |
| AGUUCUCUUUU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AUCAGAAUG | 1 |
| AGUAGAGUG | 1 |
| AAUAGAGUG | 1 |
| AUCAGCAUG | 1 |
| CGGUUCCGG | 1 |
| GUUAUCUUU | 1 |
| GUUCUCUUU | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, no parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (7)
- Basepair signature
- cWW-cWW-R-R-R-R-R
- Heat map statistics
- Min 0.40 | Avg 0.64 | Max 0.98
Coloring options: