HL_5AJ4_009

3D structure

PDB id

5AJ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 55S mammalian mitoribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUGUAAAAAG

Length

10 nucleotides

Bulged bases

5AJ4|1|AA|U|345

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5AJ4_009 not in the Motif Atlas

Homologous match to HL_4LFB_015

Geometric discrepancy: 0.1884

The information below is about HL_4LFB_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_38491.3

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

14

Unit IDs

5AJ4|1|AA|C|342
5AJ4|1|AA|U|343
5AJ4|1|AA|G|344
5AJ4|1|AA|U|345
5AJ4|1|AA|A|346
5AJ4|1|AA|A|347
5AJ4|1|AA|A|348
5AJ4|1|AA|A|349
5AJ4|1|AA|A|350
5AJ4|1|AA|G|351

Current chains

Chain AA

MITORIBOSOMAL 12S Ribosomal RNA

Nearby chains

Chain AG

MITORIBOSOMAL PROTEIN US7M, MRPS7

Chain AK

MITORIBOSOMAL PROTEIN US11M, MRPS11

Chain AU

MITORIBOSOMAL PROTEIN BS21M, MRPS21

Chain AX

MRNA