HL_5AJ4_011
3D structure
- PDB id
- 5AJ4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 55S mammalian mitoribosome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GAUUAGAUACC
- Length
- 11 nucleotides
- Bulged bases
- 5AJ4|1|AA|U|433
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5AJ4_011 not in the Motif Atlas
- Homologous match to HL_4LFB_017
- Geometric discrepancy: 0.1004
- The information below is about HL_4LFB_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_38491.3
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 14
Unit IDs
5AJ4|1|AA|G|426
5AJ4|1|AA|A|427
5AJ4|1|AA|U|428
5AJ4|1|AA|U|429
5AJ4|1|AA|A|430
5AJ4|1|AA|G|431
5AJ4|1|AA|A|432
5AJ4|1|AA|U|433
5AJ4|1|AA|A|434
5AJ4|1|AA|C|435
5AJ4|1|AA|C|436
Current chains
- Chain AA
- MITORIBOSOMAL 12S Ribosomal RNA
Nearby chains
- Chain AG
- MITORIBOSOMAL PROTEIN US7M, MRPS7
- Chain AK
- MITORIBOSOMAL PROTEIN US11M, MRPS11
- Chain AU
- MITORIBOSOMAL PROTEIN BS21M, MRPS21
- Chain AV
- P-SITE AND A-SITE TRNA
- Chain AX
- MRNA
- Chain BA
- Large subunit ribosomal RNA; LSU rRNA
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