HL_5AJ4_017
3D structure
- PDB id
- 5AJ4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 55S mammalian mitoribosome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- UAGCACA
- Length
- 7 nucleotides
- Bulged bases
- 5AJ4|1|AA|A|665
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5AJ4_017 not in the Motif Atlas
- Geometric match to HL_4GXY_003
- Geometric discrepancy: 0.2667
- The information below is about HL_4GXY_003
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_97725.1
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
5AJ4|1|AA|U|664
5AJ4|1|AA|A|665
5AJ4|1|AA|G|666
5AJ4|1|AA|C|667
5AJ4|1|AA|A|668
5AJ4|1|AA|C|669
5AJ4|1|AA|A|670
Current chains
- Chain AA
- MITORIBOSOMAL 12S Ribosomal RNA
Nearby chains
- Chain AC
- MITORIBOSOMAL PROTEIN US3M, MRPS24
- Chain AG
- MITORIBOSOMAL PROTEIN US7M, MRPS7
- Chain AI
- MITORIBOSOMAL PROTEIN US9M, MRPS9
- Chain AJ
- MITORIBOSOMAL PROTEIN US10M, MRPS10
- Chain AN
- MITORIBOSOMAL PROTEIN US14M, MRPS14
Coloring options: