HL_5AJ4_019

3D structure

PDB id

5AJ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 55S mammalian mitoribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AUGAAACU

Length

8 nucleotides

Bulged bases

5AJ4|1|AA|C|766

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5AJ4_019 not in the Motif Atlas

Geometric match to HL_4V9F_010

Geometric discrepancy: 0.2324

The information below is about HL_4V9F_010

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_13999.4

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

24

Unit IDs

5AJ4|1|AA|A|760
5AJ4|1|AA|U|761
5AJ4|1|AA|G|762
5AJ4|1|AA|A|763
5AJ4|1|AA|A|764
5AJ4|1|AA|A|765
5AJ4|1|AA|C|766
5AJ4|1|AA|U|767

Current chains

Chain AA

MITORIBOSOMAL 12S Ribosomal RNA

Nearby chains

Chain AN

MITORIBOSOMAL PROTEIN US14M, MRPS14

Chain Ai

MITORIBOSOMAL PROTEIN MS33, MRPS33