HL_5AJ4_033

3D structure

PDB id

5AJ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 55S mammalian mitoribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGUACAGC

Length

8 nucleotides

Bulged bases

5AJ4|1|BA|A|444, 5AJ4|1|BA|G|447

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5AJ4_033 not in the Motif Atlas

Homologous match to HL_4WF9_027

Geometric discrepancy: 0.1566

The information below is about HL_4WF9_027

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

428

Unit IDs

5AJ4|1|BA|G|441
5AJ4|1|BA|G|442
5AJ4|1|BA|U|443
5AJ4|1|BA|A|444
5AJ4|1|BA|C|445
5AJ4|1|BA|A|446
5AJ4|1|BA|G|447
5AJ4|1|BA|C|448

Current chains

Chain BA

MITORIBOSOMAL 16S Ribosomal RNA

Nearby chains

Chain BJ

MITORIBOSOMAL PROTEIN UL10M, MRPL10

Chain BQ

MITORIBOSOMAL PROTEIN UL16M, MRPL16

Chain Bt

MITORIBOSOMAL PROTEIN ML63, MRPL57