HL_5AJ4_036

3D structure

PDB id

5AJ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 55S mammalian mitoribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGUUAAAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5AJ4_036 not in the Motif Atlas

Homologous match to HL_6PRV_002

Geometric discrepancy: 0.1529

The information below is about HL_6PRV_002

Detailed Annotation

GNRA with tandem sheared

Broad Annotation

No text annotation

Motif group

HL_98423.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

5AJ4|1|BA|C|534
5AJ4|1|BA|G|535
5AJ4|1|BA|U|536
5AJ4|1|BA|U|537
5AJ4|1|BA|A|538
5AJ4|1|BA|A|539
5AJ4|1|BA|A|540
5AJ4|1|BA|G|541

Current chains

Chain BA

MITORIBOSOMAL 16S Ribosomal RNA

Nearby chains

Chain BK

MITORIBOSOMAL PROTEIN UL11M, MRPL11

Chain Bq

MITORIBOSOMAL PROTEIN ML54, MRPL54