HL_5AJ4_039

3D structure

PDB id

5AJ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 55S mammalian mitoribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AAUAAU

Length

6 nucleotides

Bulged bases

5AJ4|1|BA|A|687

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5AJ4_039 not in the Motif Atlas

Geometric match to HL_5TBW_044

Geometric discrepancy: 0.3875

The information below is about HL_5TBW_044

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81100.1

Basepair signature

cWW

Number of instances in this motif group

4

Unit IDs

5AJ4|1|BA|A|686
5AJ4|1|BA|A|687
5AJ4|1|BA|U|688
5AJ4|1|BA|A|689
5AJ4|1|BA|A|690
5AJ4|1|BA|U|691

Current chains

Chain BA

MITORIBOSOMAL 16S Ribosomal RNA

Nearby chains

Chain BR

MITORIBOSOMAL PROTEIN BL17M, MRPL17

Chain BW

MITORIBOSOMAL PROTEIN UL22M, MRPL22