HL_5AJ4_042

3D structure

PDB id

5AJ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 55S mammalian mitoribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UUUACCAAAAA

Length

11 nucleotides

Bulged bases

5AJ4|1|BA|A|830, 5AJ4|1|BA|C|831, 5AJ4|1|BA|C|832, 5AJ4|1|BA|A|836

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5AJ4_042 not in the Motif Atlas

Homologous match to HL_4WF9_043

Geometric discrepancy: 0.1197

The information below is about HL_4WF9_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87681.2

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

10

Unit IDs

5AJ4|1|BA|U|827
5AJ4|1|BA|U|828
5AJ4|1|BA|U|829
5AJ4|1|BA|A|830
5AJ4|1|BA|C|831
5AJ4|1|BA|C|832
5AJ4|1|BA|A|833
5AJ4|1|BA|A|834
5AJ4|1|BA|A|835
5AJ4|1|BA|A|836
5AJ4|1|BA|A|837

Current chains

Chain BA

MITORIBOSOMAL 16S Ribosomal RNA

Nearby chains

Chain B7

MITORIBOSOMAL PROTEIN BL34M, MRPL34

Chain BD

MITORIBOSOMAL PROTEIN UL2M, MRPL2