HL_5AJ4_046
3D structure
- PDB id
- 5AJ4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 55S mammalian mitoribosome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- UCCAAAUAA
- Length
- 9 nucleotides
- Bulged bases
- 5AJ4|1|BA|U|948
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5AJ4_046 not in the Motif Atlas
- Homologous match to HL_7A0S_048
- Geometric discrepancy: 0.2522
- The information below is about HL_7A0S_048
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_33350.1
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
5AJ4|1|BA|U|942
5AJ4|1|BA|C|943
5AJ4|1|BA|C|944
5AJ4|1|BA|A|945
5AJ4|1|BA|A|946
5AJ4|1|BA|A|947
5AJ4|1|BA|U|948
5AJ4|1|BA|A|949
5AJ4|1|BA|A|950
Current chains
- Chain BA
- MITORIBOSOMAL 16S Ribosomal RNA
Nearby chains
- Chain AA
- Small subunit ribosomal RNA; SSU rRNA
- Chain AY
- P-SITE AND A-SITE TRNA
- Chain BO
- MITORIBOSOMAL PROTEIN UL14M, MRPL14
Coloring options: