HL_5AJ4_064

3D structure

PDB id

5AJ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 55S mammalian mitoribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UUAAAAGA

Length

8 nucleotides

Bulged bases

5AJ4|1|BA|A|273, 5AJ4|1|BA|G|275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5AJ4_064 not in the Motif Atlas

Geometric match to HL_8C3A_039

Geometric discrepancy: 0.3398

The information below is about HL_8C3A_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

5AJ4|1|BA|U|269
5AJ4|1|BA|U|270
5AJ4|1|BA|A|271
5AJ4|1|BA|A|272
5AJ4|1|BA|A|273
5AJ4|1|BA|A|274
5AJ4|1|BA|G|275
5AJ4|1|BA|A|276

Current chains

Chain BA

MITORIBOSOMAL 16S Ribosomal RNA

Nearby chains

Chain An

MITORIBOSOMAL PROTEIN MS38, MRPS38

Chain BD

MITORIBOSOMAL PROTEIN UL2M, MRPL2

Chain Ba

MITORIBOSOMAL PROTEIN ML37, MRPL37