HL_5AKA_001

3D structure

PDB id

5AKA (explore in PDB, NAKB, or RNA 3D Hub)

Description

EM structure of ribosome-SRP-FtsY complex in closed state

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

CGGAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5AKA_001 not in the Motif Atlas

Homologous match to HL_4XCO_004

Geometric discrepancy: 0.2119

The information below is about HL_4XCO_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

5AKA|1|7|C|134
5AKA|1|7|G|135
5AKA|1|7|G|136
5AKA|1|7|A|137
5AKA|1|7|A|138
5AKA|1|7|G|139

Current chains

Chain 7

4.5S ribosomal RNA

Nearby chains