RNA 3D Hub //

5AKA Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_5AKA_0011/7/134:139No text annotation
HL_5AKA_0731/A/34:48No text annotation
homologous
HL_5J7L_215
HL_97756.2
HL_5AKA_0021/A/38:44No text annotation
geometric
HL_5NFV_001
HL_69752.2
HL_5AKA_0031/A/86:90Mini UNCG
homologous
HL_5J7L_204
HL_48778.2
HL_5AKA_0041/B/59:68No text annotation
homologous
HL_7RQB_001
NA
HL_5AKA_0051/B/87:95No text annotation
homologous
HL_5J7L_135
HL_80241.1
HL_5AKA_0061/B/123:128No text annotation
homologous
HL_4WF9_003
HL_75660.5
HL_5AKA_0071/B/137:142No text annotation
geometric
HL_5J7L_143
HL_75660.5
HL_5AKA_0081/B/158:168No text annotation
homologous
HL_5J7L_138
HL_68257.1
HL_5AKA_0091/B/194:201No text annotation
geometric
HL_4WF9_006
HL_30068.2
HL_5AKA_0101/B/225:230No text annotation
homologous
HL_5J7L_140
HL_62934.1
HL_5AKA_0111/B/246:252No text annotation
homologous
HL_4WF9_008
HL_37369.2
HL_5AKA_0741/B/305:312T-loop with 1 bulged base
homologous
HL_9DFE_009
HL_01609.3
HL_5AKA_0751/B/318:333No text annotation
HL_5AKA_0131/B/319:323No text annotation
homologous
HL_7A0S_011
HL_75660.5
HL_5AKA_0141/B/325:337No text annotation
geometric
HL_1KH6_003
HL_27483.1
HL_5AKA_0151/B/382:392No text annotation
homologous
HL_5J7L_145
HL_91503.7
HL_5AKA_0161/B/410:417Pseudoknot geometry
homologous
HL_5J7L_146
HL_30680.3
HL_5AKA_0171/B/462:467GNRA
homologous
HL_5J7L_147
HL_37824.8
HL_5AKA_0181/B/487:493GNRA
homologous
HL_5J7L_148
HL_37824.8
HL_5AKA_0191/B/543:550No text annotation
homologous
HL_5J7L_149
HL_09452.1
HL_5AKA_0201/B/566:575T-loop with 2 stacked bulged bases
homologous
HL_5J7L_150
HL_28252.9
HL_5AKA_0211/B/611:617No text annotation
homologous
HL_5J7L_151
HL_80922.2
HL_5AKA_0221/B/629:634GNRA
homologous
HL_5J7L_152
HL_37824.8
HL_5AKA_0231/B/641:647GNRA
homologous
HL_4WF9_021
HL_37824.8
HL_5AKA_0241/B/712:719GNRA wlth tandem sheared
homologous
HL_5J7L_154
HL_81538.2
HL_5AKA_0251/B/744:753No text annotation
homologous
HL_4WF9_023
HL_88205.2
HL_5AKA_0261/B/779:785UNCG variation
homologous
HL_7A0S_023
HL_53890.2
HL_5AKA_0271/B/826:831No text annotation
homologous
HL_7RQB_025
NA
HL_5AKA_0291/B/955:962GNRA
homologous
HL_4WF9_027
HL_37824.8
HL_5AKA_0301/B/978:985No text annotation
homologous
HL_7A0S_027
HL_42998.2
HL_5AKA_0311/B/1064:1074No text annotation
homologous
HL_6PRV_001
HL_19210.3
HL_5AKA_0321/B/1092:1099GNRA wlth tandem sheared
homologous
HL_6PRV_002
HL_81538.2
HL_5AKA_0331/B/1172:1177No text annotation
geometric
HL_5TBW_012
NA
HL_5AKA_0341/B/1222:1227GNRA
homologous
HL_5J7L_164
HL_37824.8
HL_5AKA_0351/B/1281:1289T-loop with 2 stacked bulged bases
homologous
HL_5J7L_165
HL_28252.9
HL_5AKA_0361/B/1324:1330Pseudoknot geometry with 3' bulge
homologous
HL_5J7L_166
HL_57176.2
HL_5AKA_0371/B/1363:1368GNRA
homologous
HL_5J7L_167
HL_37824.8
HL_5AKA_0381/B/1389:1398No text annotation
homologous
HL_5J7L_168
HL_81545.2
HL_5AKA_0391/B/1449:1462No text annotation
HL_5AKA_0401/B/1492:1498Pseudoknot geometry with 3' bulge
homologous
HL_5J7L_170
HL_57176.2
HL_5AKA_0761/B/1532:1539No text annotation
geometric
HL_5TBW_021
NA
HL_5AKA_0421/B/1565:1568No text annotation
homologous
HL_7RQB_039
NA
HL_5AKA_0431/B/1612:1619No text annotation
homologous
HL_7RQB_040
NA
HL_5AKA_0441/B/1630:1636GNRA
homologous
HL_5J7L_174
HL_37824.8
HL_5AKA_0451/B/1691:1696UNCG
geometric
HL_5J7L_175
HL_34617.5
HL_5AKA_0461/B/1728:1731No text annotation
HL_5AKA_0471/B/1752:1756No text annotation
homologous
HL_7RQB_044
NA
HL_5AKA_0481/B/1777:1787No text annotation
homologous
HL_4WF9_043
HL_01962.2
HL_5AKA_0491/B/1806:1811GNRA related
homologous
HL_5J7L_179
HL_04783.2
HL_5AKA_0501/B/1868:1873GNRA variation
homologous
HL_5J7L_180
HL_37824.8
HL_5AKA_0511/B/1910:1920No text annotation
geometric
HL_5TBW_049
NA
HL_5AKA_0521/B/1949:1957No text annotation
homologous
HL_7RQB_049
NA
HL_5AKA_0531/B/2027:2036No text annotation
homologous
HL_4WF9_047
HL_61996.3
HL_5AKA_0541/B/2142:2149No text annotation
geometric
HL_8C3A_039
NA
HL_5AKA_0551/B/2209:2215No text annotation
homologous
HL_4WF9_048
HL_49922.4
HL_5AKA_0561/B/2248:2256No text annotation
homologous
HL_5J7L_186
HL_85367.2
HL_5AKA_0571/B/2264:2276No text annotation
homologous
HL_5J7L_187
HL_91939.2
HL_5AKA_0771/B/2304:2312No text annotation
HL_5AKA_0591/B/2324:2331Pseudoknot geometry
homologous
HL_5J7L_189
HL_93324.4
HL_5AKA_0601/B/2356:2361GNRA
homologous
HL_5J7L_190
HL_37824.8
HL_5AKA_0611/B/2374:2379GNRA
homologous
HL_5J7L_191
HL_37824.8
HL_5AKA_0621/B/2404:2413No text annotation
homologous
HL_5J7L_192
HL_53454.2
HL_5AKA_0631/B/2471:2479No text annotation
homologous
HL_5J7L_193
HL_32735.2
HL_5AKA_0641/B/2528:2535GNRA variation
homologous
HL_5J7L_194
HL_31585.4
HL_5AKA_0651/B/2551:2557No text annotation
homologous
HL_4WF9_058
HL_30068.2
HL_5AKA_0661/B/2594:2599GNRA
homologous
HL_5J7L_196
HL_37824.8
HL_5AKA_0671/B/2658:2663GNRA
homologous
HL_5J7L_197
HL_37824.8
HL_5AKA_0681/B/2701:2706Ribsomal LSU H95
homologous
HL_5J7L_198
HL_65794.5
HL_5AKA_0691/B/2745:2759No text annotation
homologous
HL_5J7L_199
HL_74055.2
HL_5AKA_0701/B/2796:2800Externally structured
geometric
HL_8C3A_022
NA
HL_5AKA_0711/B/2819:2827No text annotation
homologous
HL_5J7L_201
HL_64690.6
HL_5AKA_0721/B/2856:2861GNRA
homologous
HL_5J7L_202
HL_37824.8

Problematic loops

#loop idProblemSequence
HL_5AKA_012No text annotation
HL_5AKA_028Externally structured
HL_5AKA_041No text annotation
HL_5AKA_058No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_5AKA_0011/7/104:108,
1/7/165:171		No text annotation
IL_5AKA_0041/7/113:116,
1/7/155:160		No text annotation
IL_5AKA_1201/7/118:125,
1/7/148:153		No text annotation
IL_5AKA_0061/7/127:132,
1/7/141:146		No text annotation
IL_5AKA_0071/A/17:18,
1/A/65:67		Major groove intercalation
homologous
IL_5J7L_355
IL_31462.7
IL_5AKA_0081/A/23:28,
1/A/56:60		No text annotation
homologous
IL_7A0S_103
IL_18472.4
IL_5AKA_0091/A/30:31,
1/A/51:54		Minor groove platform
homologous
IL_5TBW_374
NA
IL_5AKA_0101/A/34:38,
1/A/44:48		Symmetric double minor groove platform
homologous
IL_5J7L_358
IL_58103.11
IL_5AKA_0111/A/71:79,
1/A/97:105		Bacterial 5S Loop E
homologous
IL_5J7L_359
IL_56455.6
IL_5AKA_0121/B/24:30,
1/B/510:516		Triple sheared with non-canonical cWW
homologous
IL_5J7L_245
IL_04021.2
IL_5AKA_0131/B/36:37,
1/B/442:444		Single bulged A
homologous
IL_7A0S_002
IL_31462.7
IL_5AKA_0141/B/43:44,
1/B/434:436		Minor groove platform
homologous
IL_5J7L_247
IL_51454.3
IL_5AKA_0151/B/81:85,
1/B/97:105		No text annotation
homologous
IL_5J7L_248
IL_37015.1
IL_5AKA_0161/B/183:184,
1/B/212:214		Single stack bend
homologous
IL_5J7L_249
IL_90729.1
IL_5AKA_0171/B/188:194,
1/B/201:208		8x7 Sarcin-Ricin; G-bulge
homologous
IL_5J7L_250
IL_04346.10
IL_5AKA_0181/B/239:245,
1/B/253:258		7x6 Sarcin-Ricin; G-bulge
homologous
IL_5J7L_251
IL_26307.2
IL_5AKA_0191/B/269:272,
1/B/365:370		No text annotation
IL_5AKA_0211/B/274:281,
1/B/359:363		No text annotation
IL_5AKA_0241/B/291:295,
1/B/343:349		No text annotation
IL_5AKA_0261/B/481:484,
1/B/496:509		No text annotation
homologous
IL_5J7L_255
IL_81516.2
IL_5AKA_0271/B/536:539,
1/B/554:557		Double sheared
homologous
IL_5J7L_256
IL_09705.15
IL_5AKA_0281/B/564:566,
1/B/575:577		Isolated non-canonical cWW pair
geometric
IL_4WF9_017
IL_07785.1
IL_5AKA_0291/B/606:610,
1/B/618:622		AAA cross-strand stack
homologous
IL_5J7L_258
IL_66798.2
IL_5AKA_0301/B/672:674,
1/B/806:808		Isolated non-canonical cWW pair
homologous
IL_5J7L_259
IL_87907.2
IL_5AKA_0311/B/674:678,
1/B/799:806		tHW-tHW cross-strand stack
geometric
IL_5J7L_260
IL_54041.2
IL_5AKA_0321/B/697:698,
1/B/763:765		Single bulged A
homologous
IL_5J7L_261
IL_31462.7
IL_5AKA_0331/B/702:703,
1/B/728:730		Single bulged G
homologous
IL_5J7L_262
IL_00225.14
IL_5AKA_0341/B/703:707,
1/B/724:728		Triple sheared
geometric
IL_5J7L_263
IL_50730.2
IL_5AKA_0351/B/738:740,
1/B/757:758		Major groove platform
homologous
IL_5J7L_264
IL_48076.6
IL_5AKA_0361/B/775:777,
1/B/787:791		Multiple bulged bases
geometric
IL_5J7L_265
IL_06549.2
IL_5AKA_0371/B/837:838,
1/B/940:942		Single stack bend
homologous
IL_4WF9_028
IL_90729.1
IL_5AKA_0381/B/844:848,
1/B/930:934		No text annotation
homologous
IL_5J7L_399
IL_96236.1
IL_5AKA_0391/B/850:851,
1/B/926:928		Single stack bend
homologous
IL_5J7L_269
IL_26793.1
IL_5AKA_0401/B/856:858,
1/B/919:921		Isolated non-canonical cWW pair
geometric
IL_6CZR_171
NA
IL_5AKA_0411/B/858:862,
1/B/915:919		5x5 Sarcin-Ricin with intercalated A; G-bulge
homologous
IL_7RQB_027
NA
IL_5AKA_0421/B/862:863,
1/B/913:915		Single bulged G
geometric
IL_5J7L_271
IL_00225.14
IL_5AKA_0431/B/864:868,
1/B/909:912		C-loop with bulged stacked A's
homologous
IL_5J7L_272
IL_26222.2
IL_5AKA_0441/B/870:872,
1/B/905:907		Isolated non-canonical cWW pair
homologous
IL_5J7L_273
IL_28037.2
IL_5AKA_0451/B/994:996,
1/B/1159:1160		Single bulged C
homologous
IL_7RQB_035
NA
IL_5AKA_0461/B/998:1002,
1/B/1153:1157		UAA/GAN
homologous
IL_4WF9_036
IL_38507.2
IL_5AKA_0471/B/1004:1011,
1/B/1150:1151		SSU/LSU pseudoknot
geometric
IL_5J7L_278
IL_41203.4
IL_5AKA_0481/B/1011:1013,
1/B/1149:1150		Single bulged U
homologous
IL_5J7L_279
IL_89505.4
IL_5AKA_0491/B/1018:1024,
1/B/1140:1144		Kink-turn related
homologous
IL_4WF9_039
IL_57188.5
IL_5AKA_0501/B/1024:1030,
1/B/1124:1140		No text annotation
geometric
IL_5J7L_281
IL_50715.3
IL_5AKA_0511/B/1031:1034,
1/B/1121:1123		Isolated non-canonical cWW pair
homologous
IL_5J7L_282
IL_57744.1
IL_5AKA_1281/B/1036:1051,
1/B/1108:1119		No text annotation
IL_5AKA_1291/B/1055:1057,
1/B/1081:1104		No text annotation
IL_5AKA_0531/B/1059:1062,
1/B/1076:1079		No text annotation
geometric
IL_1MMS_001
IL_92446.2
IL_5AKA_0541/B/1087:1091,
1/B/1100:1102		Major groove platform with extra cWW
geometric
IL_1MMS_002
IL_51387.3
IL_5AKA_0551/B/1196:1198,
1/B/1247:1250		Isolated cWS basepair
homologous
IL_5J7L_286
IL_42997.3
IL_5AKA_0561/B/1202:1206,
1/B/1240:1243		No text annotation
homologous
IL_5J7L_287
IL_91920.1
IL_5AKA_0571/B/1208:1215,
1/B/1234:1238		Kink-turn
homologous
IL_5J7L_288
IL_70923.9
IL_5AKA_0581/B/1262:1269,
1/B/2011:2017		8x7 Sarcin-Ricin; G-bulge
homologous
IL_5J7L_289
IL_04346.10
IL_5AKA_0591/B/1310:1313,
1/B/1603:1604		Major groove platform; stack outside cWW
homologous
IL_7RQB_050
NA
IL_5AKA_0601/B/1319:1323,
1/B/1331:1333		C-loop
homologous
IL_5J7L_291
IL_63596.11
IL_5AKA_0611/B/1351:1355,
1/B/1376:1380		UAA/GAN
homologous
IL_5J7L_292
IL_89021.2
IL_5AKA_0621/B/1357:1361,
1/B/1370:1374		tSH-tHW-tHS
homologous
IL_5J7L_293
IL_17136.7
IL_5AKA_0631/B/1415:1416,
1/B/1582:1587		No text annotation
homologous
IL_5J7L_294
IL_87211.1
IL_5AKA_0641/B/1417:1421,
1/B/1577:1581		UAA/GAN
homologous
IL_5J7L_295
IL_38507.2
IL_5AKA_0651/B/1432:1435,
1/B/1557:1561		Tandem non-canonical cWW pairs
homologous
IL_5J7L_296
IL_58112.2
IL_5AKA_0661/B/1437:1440,
1/B/1551:1555		tSH-tHW
homologous
IL_7A0S_053
IL_99646.2
IL_5AKA_0681/B/1472:1478,
1/B/1513:1519		No text annotation
IL_5AKA_0691/B/1481:1482,
1/B/1507:1510		No text annotation
IL_5AKA_0701/B/1489:1491,
1/B/1499:1500		Single bulged A
homologous
IL_5J7L_302
IL_31462.7
IL_5AKA_0711/B/1526:1530,
1/B/1541:1546		Triple sheared related
geometric
IL_4V9F_018
IL_97631.1
IL_5AKA_0721/B/1651:1656,
1/B/2004:2006		No text annotation
homologous
IL_5J7L_304
IL_12566.4
IL_5AKA_0731/B/1663:1665,
1/B/1995:1997		Isolated tWW turn
homologous
IL_5J7L_305
IL_67095.2
IL_5AKA_0741/B/1666:1669,
1/B/1993:1994		Major groove platform; stack outside cWW
homologous
IL_7RQB_066
NA
IL_5AKA_1251/B/1666:1674,
1/B/1990:1994		No text annotation
homologous
IL_5J7L_386
IL_22854.4
IL_5AKA_0751/B/1669:1674,
1/B/1990:1993		Intercalated tWH
geometric
IL_5J7L_307
IL_76758.2
IL_5AKA_0761/B/1686:1691,
1/B/1696:1702		tSH-tSH-tHH-tHS
homologous
IL_5J7L_308
IL_47346.2
IL_5AKA_0771/B/1712:1718,
1/B/1742:1746		6x5 Sarcin-Ricin; G-bulge
homologous
IL_5J7L_309
IL_88269.4
IL_5AKA_0781/B/1720:1724,
1/B/1736:1740		Triple sheared
homologous
IL_5J7L_310
IL_50730.2
IL_5AKA_0791/B/1727:1728,
1/B/1731:1733		Single bulged C
homologous
IL_5J7L_311
IL_61258.15
IL_5AKA_0801/B/1770:1771,
1/B/1980:1982		Single bulged A
homologous
IL_5J7L_312
IL_31462.7
IL_5AKA_0811/B/1798:1804,
1/B/1813:1821		Kink-turn related
homologous
IL_5J7L_313
IL_17069.5
IL_5AKA_0821/B/1837:1840,
1/B/1902:1903		Minor groove platform, major groove intercalation
homologous
IL_5J7L_314
IL_95583.2
IL_5AKA_0831/B/1841:1842,
1/B/1898:1901		Major groove intercalation
homologous
IL_5J7L_315
IL_82107.5
IL_5AKA_0841/B/1846:1849,
1/B/1893:1894		Minor groove platform
homologous
IL_7RQB_073
NA
IL_5AKA_1261/B/1851:1860,
1/B/1882:1891		No text annotation
homologous
IL_5J7L_387
IL_61249.1
IL_5AKA_0851/B/1864:1867,
1/B/1874:1878		UAA/GAN related
homologous
IL_5J7L_317
IL_77691.5
IL_5AKA_0861/B/1933:1934,
1/B/1964:1967		Bulged stacked bases
geometric
IL_5J7L_318
IL_22551.4
IL_5AKA_0871/B/1934:1945,
1/B/1961:1964		No text annotation
homologous
IL_7A0S_072
IL_04332.3
IL_5AKA_0881/B/2050:2052,
1/B/2617:2618		Major groove platform
homologous
IL_5J7L_320
IL_48076.6
IL_5AKA_0891/B/2054:2056,
1/B/2612:2615		No text annotation
homologous
IL_5J7L_321
IL_83389.2
IL_5AKA_0901/B/2067:2069,
1/B/2442:2443		Single bulged U
homologous
IL_7A0S_075
IL_89505.4
IL_5AKA_0911/B/2070:2071,
1/B/2438:2441		Minor groove platform
homologous
IL_5J7L_324
IL_51454.3
IL_5AKA_0921/B/2081:2083,
1/B/2236:2239		Isolated tHS basepair with bulges
homologous
IL_5J7L_325
IL_85599.2
IL_5AKA_0931/B/2085:2087,
1/B/2232:2234		Isolated non-canonical cWW pair
homologous
IL_5J7L_326
IL_28037.2
IL_5AKA_0941/B/2103:2105,
1/B/2184:2186		Stack and bulge
geometric
IL_2O3X_001
IL_31737.3
IL_5AKA_0951/B/2108:2110,
1/B/2179:2181		Isolated non-canonical cWW pair
homologous
IL_3U4M_001
IL_28037.2
IL_5AKA_0961/B/2202:2204,
1/B/2220:2221		Single bulged U
homologous
IL_5J7L_331
IL_89505.4
IL_5AKA_0971/B/2350:2353,
1/B/2364:2367		Double sheared
homologous
IL_5J7L_333
IL_09705.15
IL_5AKA_0981/B/2401:2403,
1/B/2414:2415		No text annotation
IL_5AKA_0991/B/2453:2454,
1/B/2498:2500		Single stack bend
geometric
IL_4WF9_089
IL_26793.1
IL_5AKA_1001/B/2454:2455,
1/B/2496:2498		Major groove platform
homologous
IL_7RQB_092
NA
IL_5AKA_1011/B/2457:2459,
1/B/2493:2494		Major groove platform
homologous
IL_4WF9_091
IL_48076.6
IL_5AKA_1021/B/2459:2461,
1/B/2489:2493		Major groove minor groove platform with extra cWW
geometric
IL_5J7L_337
IL_51387.3
IL_5AKA_1031/B/2466:2470,
1/B/2480:2484		Double sheared with non-canonical cWW
homologous
IL_5J7L_338
IL_17948.2
IL_5AKA_1041/B/2507:2508,
1/B/2580:2582		Major groove platform
homologous
IL_4WF9_094
IL_07039.3
IL_5AKA_1051/B/2510:2512,
1/B/2574:2578		Isolated non-canonical cWW with bulges
homologous
IL_5J7L_340
IL_07785.1
IL_5AKA_1061/B/2512:2513,
1/B/2571:2574		No text annotation
geometric
IL_5J7L_341
IL_42626.2
IL_5AKA_1071/B/2522:2523,
1/B/2540:2543		Major groove platform with intercalation
homologous
IL_5J7L_342
IL_02555.1
IL_5AKA_1081/B/2591:2592,
1/B/2601:2603		Single bulged A
homologous
IL_5J7L_344
IL_31462.7
IL_5AKA_1091/B/2636:2640,
1/B/2774:2782		tSH-tHS-tHW
homologous
IL_5J7L_345
IL_04638.3
IL_5AKA_1101/B/2652:2658,
1/B/2663:2668		Sarcin-Ricin target in LSU H95; G-bulge
geometric
IL_5J7L_346
IL_16458.4
IL_5AKA_1111/B/2680:2684,
1/B/2725:2727		C-loop
homologous
IL_5J7L_347
IL_63596.11
IL_5AKA_1121/B/2687:2691,
1/B/2718:2722		UAA/GAN related, with intercalation
homologous
IL_5J7L_348
IL_23774.1
IL_5AKA_1131/B/2695:2696,
1/B/2711:2714		Multiple bulged bases
homologous
IL_5J7L_349
IL_42626.2
IL_5AKA_1141/B/2737:2742,
1/B/2762:2767		UAA/GAN with extra cWW
homologous
IL_5J7L_350
IL_49767.8
IL_5AKA_1151/B/2806:2811,
1/B/2889:2892		No text annotation
homologous
IL_5J7L_351
IL_29471.1
IL_5AKA_1161/B/2838:2839,
1/B/2878:2880		Major groove intercalation
homologous
IL_4WF9_106
IL_66635.5
IL_5AKA_1171/B/2843:2846,
1/B/2870:2874		Multiple bulged bases with non-canonical cWW
homologous
IL_5J7L_353
IL_64231.5
IL_5AKA_1181/B/2847:2852,
1/B/2865:2869		No text annotation
homologous
IL_7A0S_101
IL_70411.2

Problematic loops

#loop idProblemSequence
IL_5AKA_002No text annotation
IL_5AKA_119No text annotation
IL_5AKA_127No text annotation
IL_5AKA_003No text annotation
IL_5AKA_005No text annotation
IL_5AKA_121No text annotation
IL_5AKA_020Isolated non-canonical cWW pair
IL_5AKA_122No text annotation
IL_5AKA_022No text annotation
IL_5AKA_023Isolated non-canonical cWW pair
IL_5AKA_025Isolated non-canonical cWW pair
IL_5AKA_123No text annotation
IL_5AKA_124No text annotation
IL_5AKA_052Isolated non-canonical cWW pair
IL_5AKA_067Tandem non-canonical cWW pairs

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_5AKA_0011/A/10:16,
1/A/68:70,
1/A/106:110		No text annotation
homologous
J3_5J7L_049
J3_89095.1
J3_5AKA_0111/B/30:31,
1/B/474:481,
1/B/509:510		No text annotation
geometric
J3_8VTW_036
NA
J3_5AKA_0121/B/30:31,
1/B/474:484,
1/B/496:510		No text annotation
homologous
J3_5J7L_066
J3_92134.2
J3_5AKA_0131/B/32:35,
1/B/445:461,
1/B/468:473		No text annotation
homologous
J3_5J7L_067
J3_30040.2
J3_5AKA_0141/B/56:57,
1/B/70:76,
1/B/110:114		No text annotation
homologous
J3_5J7L_037
J3_35667.2
J3_5AKA_0151/B/297:301,
1/B/316:317,
1/B/334:341		No text annotation
J3_5AKA_0021/B/683:689,
1/B/773:775,
1/B/791:794		No text annotation
homologous
J3_5J7L_038
J3_64189.2
J3_5AKA_0031/B/698:700,
1/B/732:736,
1/B/760:763		No text annotation
homologous
J3_5J7L_039
J3_44724.7
J3_5AKA_0041/B/1055:1057,
1/B/1081:1087,
1/B/1102:1104		No text annotation
homologous
J3_5J7L_040
J3_28621.5
J3_5AKA_0051/B/1298:1303,
1/B/1625:1627,
1/B/1639:1642		No text annotation
homologous
J3_5J7L_041
J3_32852.6
J3_5AKA_0061/B/1306:1309,
1/B/1605:1611,
1/B/1620:1622		No text annotation
homologous
J3_7RQB_008
NA
J3_5AKA_0161/B/1344:1350,
1/B/1381:1385,
1/B/1402:1403		No text annotation
homologous
J3_5J7L_043
J3_92705.1
J3_5AKA_0171/B/1424:1429,
1/B/1564:1565,
1/B/1568:1574		No text annotation
homologous
J3_5J7L_069
J3_34864.2
J3_5AKA_0071/B/2091:2093,
1/B/2196:2200,
1/B/2223:2228		Kink-turn 3-way junction
homologous
J3_5J7L_044
J3_89368.5
J3_5AKA_0181/B/2282:2284,
1/B/2384:2395,
1/B/2421:2427		No text annotation
homologous
J3_5J7L_070
J3_20992.1
J3_5AKA_0081/B/2295:2299,
1/B/2317:2323,
1/B/2332:2337		No text annotation
homologous
J3_5J7L_071
J3_44961.1
J3_5AKA_0091/B/2517:2520,
1/B/2545:2547,
1/B/2561:2567		No text annotation
homologous
J3_5J7L_046
J3_32601.5
J3_5AKA_0191/B/2789:2791,
1/B/2805:2806,
1/B/2892:2894		No text annotation
homologous
J3_5J7L_047
J3_30104.1
J3_5AKA_0101/B/2812:2815,
1/B/2831:2836,
1/B/2882:2888		No text annotation
homologous
J3_5J7L_048
J3_64069.1
J4_5AKA_0011/B/268:272,
1/B/365:375,
1/B/399:406,
1/B/421:424		No text annotation
J4_5AKA_0021/B/601:604,
1/B/624:628,
1/B/635:638,
1/B/650:656		No text annotation
homologous
J4_5J7L_020
J4_60168.1
J4_5AKA_0031/B/1270:1276,
1/B/1294:1295,
1/B/1645:1648,
1/B/2009:2010		No text annotation
homologous
J4_5J7L_021
J4_64571.5
J4_5AKA_0041/B/1310:1314,
1/B/1338:1343,
1/B/1404:1405,
1/B/1597:1604		No text annotation
homologous
J4_5J7L_022
J4_69051.6
J4_5AKA_0051/B/1313:1314,
1/B/1338:1343,
1/B/1404:1405,
1/B/1597:1603		No text annotation
homologous
J4_5J7L_023
J4_10313.5
J4_5AKA_0111/B/1441:1445,
1/B/1466:1478,
1/B/1513:1526,
1/B/1546:1550		No text annotation
J4_5AKA_0071/B/1772:1776,
1/B/1788:1792,
1/B/1827:1830,
1/B/1975:1979		No text annotation
homologous
J4_5J7L_025
J4_61477.5
J4_5AKA_0081/B/1833:1835,
1/B/1905:1906,
1/B/1924:1933,
1/B/1967:1972		No text annotation
homologous
J4_9DFE_008
J4_93343.1
J4_5AKA_0091/B/2285:2289,
1/B/2343:2347,
1/B/2370:2372,
1/B/2381:2383		No text annotation
homologous
J4_5J7L_027
J4_04930.6
J4_5AKA_0101/B/2643:2646,
1/B/2674:2676,
1/B/2731:2735,
1/B/2769:2771		No text annotation
homologous
J4_5J7L_028
J4_77044.4
J5_5AKA_0011/B/47:54,
1/B/116:121,
1/B/130:131,
1/B/148:150,
1/B/176:178		No text annotation
homologous
J5_5J7L_013
J5_01737.2
J5_5AKA_0021/B/531:533,
1/B/560:564,
1/B/577:579,
1/B/1261:1262,
1/B/2017:2018		No text annotation
homologous
J5_5J7L_014
J5_43153.5
J5_5AKA_0031/B/584:589,
1/B/668:671,
1/B/809:812,
1/B/1195:1196,
1/B/1250:1256		No text annotation
homologous
J5_5J7L_015
J5_74302.5
J5_5AKA_0041/B/1674:1682,
1/B/1706:1707,
1/B/1751:1752,
1/B/1756:1764,
1/B/1988:1990		No text annotation
homologous
J5_5J7L_016
J5_62523.6
J5_5AKA_0051/B/2057:2064,
1/B/2446:2453,
1/B/2500:2506,
1/B/2583:2588,
1/B/2606:2611		No text annotation
J5_5AKA_0061/B/2074:2077,
1/B/2243:2246,
1/B/2258:2259,
1/B/2281:2282,
1/B/2427:2435		No text annotation
homologous
J5_4WF9_007
J5_39529.1
J6_5AKA_0011/B/45:46,
1/B/179:183,
1/B/214:224,
1/B/231:235,
1/B/262:266,
1/B/426:433		No text annotation
J6_5AKA_0021/B/2074:2077,
1/B/2243:2246,
1/B/2258:2259,
1/B/2281:2284,
1/B/2384:2395,
1/B/2421:2435		No text annotation
J7_5AKA_0011/B/8:15,
1/B/525:531,
1/B/2018:2023,
1/B/2040:2043,
1/B/2625:2630,
1/B/2788:2789,
1/B/2894:2895		No text annotation
J7_5AKA_0021/B/817:822,
1/B/835:837,
1/B/942:946,
1/B/971:976,
1/B/987:991,
1/B/1163:1164,
1/B/1185:1190		No text annotation

Problematic loops

#loop idProblemSequence
J4_5AKA_006No text annotation

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