HL_5AKA_014

3D structure

PDB id

5AKA (explore in PDB, NAKB, or RNA 3D Hub)

Description

EM structure of ribosome-SRP-FtsY complex in closed state

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

GGGUGACAGCCCC

Length

13 nucleotides

Bulged bases

5AKA|1|B|G|329, 5AKA|1|B|A|330, 5AKA|1|B|C|331

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5AKA_014 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.3512

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_05426.1

Basepair signature

cWW-F-F

Number of instances in this motif group

2

Unit IDs

5AKA|1|B|G|325
5AKA|1|B|G|326
5AKA|1|B|G|327
5AKA|1|B|U|328
5AKA|1|B|G|329
5AKA|1|B|A|330
5AKA|1|B|C|331
5AKA|1|B|A|332
5AKA|1|B|G|333
5AKA|1|B|C|334
5AKA|1|B|C|335
5AKA|1|B|C|336
5AKA|1|B|C|337

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain E

50S RIBOSOMAL PROTEIN L4

Chain U

50S RIBOSOMAL PROTEIN L24