HL_5AKA_016

3D structure

PDB id

5AKA (explore in PDB, NAKB, or RNA 3D Hub)

Description

EM structure of ribosome-SRP-FtsY complex in closed state

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

5AKA|1|B|G|411

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5AKA_016 not in the Motif Atlas

Homologous match to HL_5J7L_146

Geometric discrepancy: 0.0733

The information below is about HL_5J7L_146

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

5AKA|1|B|G|410
5AKA|1|B|G|411
5AKA|1|B|A|412
5AKA|1|B|C|413
5AKA|1|B|C|414
5AKA|1|B|A|415
5AKA|1|B|U|416
5AKA|1|B|C|417

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain L

50S RIBOSOMAL PROTEIN L15