HL_5AKA_020

3D structure

PDB id

5AKA (explore in PDB, NAKB, or RNA 3D Hub)

Description

EM structure of ribosome-SRP-FtsY complex in closed state

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

UUUUGUAUAA

Length

10 nucleotides

Bulged bases

5AKA|1|B|A|574

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5AKA_020 not in the Motif Atlas

Homologous match to HL_5J7L_150

Geometric discrepancy: 0.075

The information below is about HL_5J7L_150

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_28252.9

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

5AKA|1|B|U|566
5AKA|1|B|U|567
5AKA|1|B|U|568
5AKA|1|B|U|569
5AKA|1|B|G|570
5AKA|1|B|U|571
5AKA|1|B|A|572
5AKA|1|B|U|573
5AKA|1|B|A|574
5AKA|1|B|A|575

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain L

50S RIBOSOMAL PROTEIN L15

Chain Q

50S RIBOSOMAL PROTEIN L20

Chain R

50S RIBOSOMAL PROTEIN L21