HL_5AKA_021

3D structure

PDB id

5AKA (explore in PDB, NAKB, or RNA 3D Hub)

Description

EM structure of ribosome-SRP-FtsY complex in closed state

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

CGAAUAG

Length

7 nucleotides

Bulged bases

5AKA|1|B|A|613, 5AKA|1|B|U|615

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5AKA_021 not in the Motif Atlas

Homologous match to HL_5J7L_151

Geometric discrepancy: 0.2383

The information below is about HL_5J7L_151

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_80922.2

Basepair signature

cWW-tSH-F

Number of instances in this motif group

3

Unit IDs

5AKA|1|B|C|611
5AKA|1|B|G|612
5AKA|1|B|A|613
5AKA|1|B|A|614
5AKA|1|B|U|615
5AKA|1|B|A|616
5AKA|1|B|G|617

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain E

50S RIBOSOMAL PROTEIN L4