HL_5AKA_030

3D structure

PDB id

5AKA (explore in PDB, NAKB, or RNA 3D Hub)

Description

EM structure of ribosome-SRP-FtsY complex in closed state

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

GAAACAAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5AKA_030 not in the Motif Atlas

Homologous match to HL_7A0S_027

Geometric discrepancy: 0.3643

The information below is about HL_7A0S_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47171.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

5AKA|1|B|G|978
5AKA|1|B|A|979
5AKA|1|B|A|980
5AKA|1|B|A|981
5AKA|1|B|C|982
5AKA|1|B|A|983
5AKA|1|B|A|984
5AKA|1|B|C|985

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain Q

50S RIBOSOMAL PROTEIN L20