HL_5AKA_039

3D structure

PDB id

5AKA (explore in PDB, NAKB, or RNA 3D Hub)

Description

EM structure of ribosome-SRP-FtsY complex in closed state

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

GGCGACGGUUGUCC

Length

14 nucleotides

Bulged bases

5AKA|1|B|A|1453, 5AKA|1|B|C|1454, 5AKA|1|B|U|1458, 5AKA|1|B|G|1459, 5AKA|1|B|U|1460

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5AKA|1|B|G|1449
5AKA|1|B|G|1450
5AKA|1|B|C|1451
5AKA|1|B|G|1452
5AKA|1|B|A|1453
5AKA|1|B|C|1454
5AKA|1|B|G|1455
5AKA|1|B|G|1456
5AKA|1|B|U|1457
5AKA|1|B|U|1458
5AKA|1|B|G|1459
5AKA|1|B|U|1460
5AKA|1|B|C|1461
5AKA|1|B|C|1462

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain N

50S RIBOSOMAL PROTEIN L17