HL_5AKA_053

3D structure

PDB id

5AKA (explore in PDB, NAKB, or RNA 3D Hub)

Description

EM structure of ribosome-SRP-FtsY complex in closed state

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

GUGAAGAUGC

Length

10 nucleotides

Bulged bases

5AKA|1|B|A|2030, 5AKA|1|B|A|2031, 5AKA|1|B|G|2032

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5AKA_053 not in the Motif Atlas

Homologous match to HL_4WF9_047

Geometric discrepancy: 0.1152

The information below is about HL_4WF9_047

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_78372.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

10

Unit IDs

5AKA|1|B|G|2027
5AKA|1|B|U|2028
5AKA|1|B|G|2029
5AKA|1|B|A|2030
5AKA|1|B|A|2031
5AKA|1|B|G|2032
5AKA|1|B|A|2033
5AKA|1|B|U|2034
5AKA|1|B|G|2035
5AKA|1|B|C|2036

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain 0

50S RIBOSOMAL PROTEIN L32

Chain D

50S RIBOSOMAL PROTEIN L3