HL_5AKA_056

3D structure

PDB id

5AKA (explore in PDB, NAKB, or RNA 3D Hub)

Description

EM structure of ribosome-SRP-FtsY complex in closed state

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

5AKA|1|B|G|2250

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5AKA_056 not in the Motif Atlas

Homologous match to HL_5J7L_186

Geometric discrepancy: 0.0732

The information below is about HL_5J7L_186

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_85367.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

5AKA|1|B|C|2248
5AKA|1|B|U|2249
5AKA|1|B|G|2250
5AKA|1|B|G|2251
5AKA|1|B|G|2252
5AKA|1|B|G|2253
5AKA|1|B|C|2254
5AKA|1|B|G|2255
5AKA|1|B|G|2256

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain M

50S RIBOSOMAL PROTEIN L16

Chain W

50S RIBOSOMAL PROTEIN L27