HL_5AKA_058

3D structure

PDB id

5AKA (explore in PDB, NAKB, or RNA 3D Hub)

Description

EM structure of ribosome-SRP-FtsY complex in closed state

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

GGUCGGACAUC

Length

11 nucleotides

Bulged bases

5AKA|1|B|G|2307

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5AKA_058 not in the Motif Atlas

Homologous match to HL_4WF9_051

Geometric discrepancy: 0.5265

The information below is about HL_4WF9_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5AKA|1|B|G|2303
5AKA|1|B|G|2304
5AKA|1|B|U|2305
5AKA|1|B|C|2306
5AKA|1|B|G|2307
5AKA|1|B|G|2308
5AKA|1|B|A|2309
5AKA|1|B|C|2310
5AKA|1|B|A|2311
5AKA|1|B|U|2312
5AKA|1|B|C|2313

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain A

5S ribosomal RNA; 5S rRNA

Chain F

50S RIBOSOMAL PROTEIN L5