HL_5AKA_063

3D structure

PDB id

5AKA (explore in PDB, NAKB, or RNA 3D Hub)

Description

EM structure of ribosome-SRP-FtsY complex in closed state

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

AGUUCAUAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5AKA_063 not in the Motif Atlas

Homologous match to HL_5J7L_193

Geometric discrepancy: 0.1487

The information below is about HL_5J7L_193

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_32735.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

5AKA|1|B|A|2471
5AKA|1|B|G|2472
5AKA|1|B|U|2473
5AKA|1|B|U|2474
5AKA|1|B|C|2475
5AKA|1|B|A|2476
5AKA|1|B|U|2477
5AKA|1|B|A|2478
5AKA|1|B|U|2479

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain 4

50S RIBOSOMAL PROTEIN L36

Chain G

50S RIBOSOMAL PROTEIN L6

Chain M

50S RIBOSOMAL PROTEIN L16