HL_5AKA_073

3D structure

PDB id

5AKA (explore in PDB, NAKB, or RNA 3D Hub)

Description

EM structure of ribosome-SRP-FtsY complex in closed state

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

ACCCCAUGCCGAACU

Length

15 nucleotides

Bulged bases

5AKA|1|A|G|41

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5AKA_073 not in the Motif Atlas

Homologous match to HL_5J7L_215

Geometric discrepancy: 0.133

The information below is about HL_5J7L_215

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_97756.2

Basepair signature

cWW-cSH-cWS-F-tSW-cSW-F-cWW-F-F-F

Number of instances in this motif group

6

Unit IDs

5AKA|1|A|A|34
5AKA|1|A|C|35
5AKA|1|A|C|36
5AKA|1|A|C|37
5AKA|1|A|C|38
5AKA|1|A|A|39
5AKA|1|A|U|40
5AKA|1|A|G|41
5AKA|1|A|C|42
5AKA|1|A|C|43
5AKA|1|A|G|44
5AKA|1|A|A|45
5AKA|1|A|A|46
5AKA|1|A|C|47
5AKA|1|A|U|48

Current chains

Chain A

5S ribosomal RNA

Nearby chains

Chain B

Large subunit ribosomal RNA; LSU rRNA

Chain F

50S RIBOSOMAL PROTEIN L5

Chain O

50S RIBOSOMAL PROTEIN L18