HL_5AKA_074

3D structure

PDB id

5AKA (explore in PDB, NAKB, or RNA 3D Hub)

Description

EM structure of ribosome-SRP-FtsY complex in closed state

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

CUGGAAAG

Length

8 nucleotides

Bulged bases

5AKA|1|B|A|311

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5AKA_074 not in the Motif Atlas

Homologous match to HL_9DFE_009

Geometric discrepancy: 0.2871

The information below is about HL_9DFE_009

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_13999.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

21

Unit IDs

5AKA|1|B|C|305
5AKA|1|B|U|306
5AKA|1|B|G|307
5AKA|1|B|G|308
5AKA|1|B|A|309
5AKA|1|B|A|310
5AKA|1|B|A|311
5AKA|1|B|G|312

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain U

50S RIBOSOMAL PROTEIN L24