HL_5AKA_075

3D structure

PDB id

5AKA (explore in PDB, NAKB, or RNA 3D Hub)

Description

EM structure of ribosome-SRP-FtsY complex in closed state

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

CGAUACAGGGUGACAG

Length

16 nucleotides

Bulged bases

5AKA|1|B|U|321, 5AKA|1|B|A|322, 5AKA|1|B|G|329, 5AKA|1|B|A|330, 5AKA|1|B|C|331

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5AKA|1|B|C|318
5AKA|1|B|G|319
5AKA|1|B|A|320
5AKA|1|B|U|321
5AKA|1|B|A|322
5AKA|1|B|C|323
5AKA|1|B|A|324
5AKA|1|B|G|325
5AKA|1|B|G|326
5AKA|1|B|G|327
5AKA|1|B|U|328
5AKA|1|B|G|329
5AKA|1|B|A|330
5AKA|1|B|C|331
5AKA|1|B|A|332
5AKA|1|B|G|333

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain E

50S RIBOSOMAL PROTEIN L4

Chain U

50S RIBOSOMAL PROTEIN L24