3D structure

PDB id
5AOX (explore in PDB, NAKB, or RNA 3D Hub)
Description
Human Alu RNA retrotransposition complex in the ribosome-stalling conformation
Experimental method
X-RAY DIFFRACTION
Resolution
2.04 Å

Loop

Sequence
GGUGGCUC
Length
8 nucleotides
Bulged bases (A, C, G, U)
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_84085.3
Basepair signature
cWW-tSH-F-F-F-F
Number of instances in this motif group
17

Unit IDs

5AOX|1|C|G|11
5AOX|1|C|G|12
5AOX|1|C|U|13
5AOX|1|C|G|14
5AOX|1|C|G|15
5AOX|1|C|C|16
5AOX|1|C|U|17
5AOX|1|C|C|18

Current chains

Chain C
ALU JO CONSENSUS RNA

Nearby chains

No other chains within 10Å

Coloring options:

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