5AOX Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_5AOX_001 | 1/C/11:18 | GNRA wlth tandem sheared HL_81538.2 | ||
| HL_5AOX_002 | 1/C/32:41 | No text annotation HL_73255.1 | ||
| HL_5AOX_004 | 1/F/11:18 | GNRA wlth tandem sheared | geometric HL_5AOX_001 HL_81538.2 | |
| HL_5AOX_005 | 1/F/32:41 | No text annotation | geometric HL_5AOX_002 HL_73255.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_5AOX_003 | No text annotation | ||
| HL_5AOX_006 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_5AOX_001 | 1/C/9:11, 1/C/18:20 | Isolated non-canonical cWW pair IL_87907.2 | ||
| IL_5AOX_002 | 1/C/56:58, 1/C/108:109 | Single bulged A IL_31462.5 | ||
| IL_5AOX_003 | 1/C/58:61, 1/C/105:108 | Double sheared IL_09705.15 | ||
| IL_5AOX_004 | 1/F/9:11, 1/F/18:20 | Isolated non-canonical cWW pair | geometric IL_5AOX_001 IL_87907.2 | |
| IL_5AOX_006 | 1/F/56:58, 1/F/108:109 | No text annotation | ||
| IL_5AOX_005 | 1/F/58:61, 1/F/105:108 | Double sheared | geometric IL_5AOX_003 IL_09705.15 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_5AOX_001 | 1/C/4:5, 1/C/24:29, 1/C/44:45 | No text annotation J3_11375.2 | ||
| J3_5AOX_002 | 1/F/4:5, 1/F/24:29, 1/F/44:45 | No text annotation | geometric J3_5AOX_001 J3_11375.2 |
Problematic loops
No problematic loops
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