HL_5APN_020

3D structure

PDB id

5APN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and N-terminally tagged Rei1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.91 Å

Loop

Sequence

GACGUGCAAAUC

Length

12 nucleotides

Bulged bases

5APN|1|5|U|879, 5APN|1|5|A|883

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5APN|1|5|G|875
5APN|1|5|A|876
5APN|1|5|C|877
5APN|1|5|G|878
5APN|1|5|U|879
5APN|1|5|G|880
5APN|1|5|C|881
5APN|1|5|A|882
5APN|1|5|A|883
5APN|1|5|A|884
5APN|1|5|U|885
5APN|1|5|C|886

Current chains

Chain 5

25S rRNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain P

60S ribosomal protein L17-A

Chain j

60S ribosomal protein L37-A

Chain y

Cytoplasmic 60S subunit biogenesis factor REI1