RNA 3D Hub //

5APN Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_5APN_0011/5/38:45No text annotation
geometric
HL_4WF9_006
HL_30068.2
HL_5APN_0021/5/69:74No text annotation
homologous
HL_5TBW_002
NA
HL_5APN_0031/5/90:96No text annotation
homologous
HL_8C3A_003
NA
HL_5APN_0041/5/132:136No text annotation
homologous
HL_5TBW_004
NA
HL_5APN_0051/5/194:201T-loop with 2 stacked bulged bases
homologous
HL_8C3A_005
NA
HL_5APN_0061/5/208:212No text annotation
homologous
HL_5TBW_006
NA
HL_5APN_0071/5/216:224T-loop with unstacked turn
homologous
HL_5TBW_007
NA
HL_5APN_0081/5/278:287No text annotation
homologous
HL_5TBW_008
NA
HL_5APN_0091/5/303:312Pseudoknot geometry
geometric
HL_4QLM_002
HL_77600.2
HL_5APN_0101/5/357:362GNRA
homologous
HL_8C3A_010
NA
HL_5APN_0111/5/382:387GNRA
homologous
HL_8C3A_011
NA
HL_5APN_0121/5/543:548UNCG
geometric
HL_3U4M_001
HL_34617.5
HL_5APN_0131/5/599:604GNRA
homologous
HL_5TBW_013
NA
HL_5APN_0141/5/640:649T-loop with 2 stacked bulged bases
homologous
HL_8C3A_014
NA
HL_5APN_0781/5/687:693No text annotation
geometric
HL_5J7L_151
HL_80922.2
HL_5APN_0161/5/707:712GNRA
homologous
HL_5TBW_016
NA
HL_5APN_0171/5/732:737GNRA
homologous
HL_5TBW_017
NA
HL_5APN_0181/5/763:768No text annotation
geometric
HL_5TBW_018
NA
HL_5APN_0191/5/844:849GNRA
homologous
HL_5TBW_019
NA
HL_5APN_0811/5/876:885No text annotation
homologous
HL_8CRE_019
HL_88205.2
HL_5APN_0211/5/910:918No text annotation
homologous
HL_5TBW_021
NA
HL_5APN_0221/5/958:963Externally structured
homologous
HL_5TBW_022
NA
HL_5APN_0241/5/1076:1083No text annotation
homologous
HL_5TBW_024
NA
HL_5APN_0251/5/1126:1132GNRA
homologous
HL_8C3A_025
NA
HL_5APN_0261/5/1148:1155No text annotation
homologous
HL_5TBW_026
NA
HL_5APN_0271/5/1239:1249No text annotation
homologous
HL_8C3A_027
NA
HL_5APN_0281/5/1267:1274GNRA wlth tandem sheared
homologous
HL_8C3A_028
NA
HL_5APN_0291/5/1347:1357No text annotation
homologous
HL_8P9A_141
HL_29762.1
HL_5APN_0301/5/1403:1408GNRA
homologous
HL_5TBW_030
NA
HL_5APN_0821/5/1462:1470No text annotation
homologous
HL_8CRE_030
HL_28252.8
HL_5APN_0321/5/1506:1512Pseudoknot geometry with 3' bulge
homologous
HL_5TBW_032
NA
HL_5APN_0331/5/1544:1549GNRA variation
homologous
HL_8C3A_033
NA
HL_5APN_0341/5/1567:1571No text annotation
geometric
HL_4O26_001
HL_35941.1
HL_5APN_0351/5/1599:1608No text annotation
homologous
HL_5TBW_035
NA
HL_5APN_0361/5/1634:1639GNRA
homologous
HL_5TBW_036
NA
HL_5APN_0371/5/1680:1688No text annotation
homologous
HL_5TBW_037
NA
HL_5APN_0381/5/1719:1725No text annotation
homologous
HL_5TBW_038
NA
HL_5APN_0391/5/1759:1766No text annotation
geometric
HL_6D12_002
HL_48417.5
HL_5APN_0401/5/1792:1796No text annotation
homologous
HL_8C3A_040
NA
HL_5APN_0411/5/1844:1851No text annotation
homologous
HL_5TBW_041
NA
HL_5APN_0421/5/1862:1868GNRA
homologous
HL_5TBW_042
NA
HL_5APN_0431/5/1923:1928No text annotation
geometric
HL_7RQB_042
NA
HL_5APN_0451/5/2110:2114No text annotation
homologous
HL_5TBW_045
NA
HL_5APN_0831/5/2135:2145No text annotation
homologous
HL_8CRE_044
HL_01962.2
HL_5APN_0471/5/2164:2170GNRA
homologous
HL_8C3A_047
NA
HL_5APN_0481/5/2220:2225GNRA
homologous
HL_8C3A_048
NA
HL_5APN_0491/5/2292:2300No text annotation
homologous
HL_8C3A_050
NA
HL_5APN_0501/5/2369:2378No text annotation
homologous
HL_5TBW_051
NA
HL_5APN_0521/5/2535:2544Externally structured
geometric
HL_8C3A_022
NA
HL_5APN_0531/5/2568:2573Externally structured
geometric
HL_8C3A_022
NA
HL_5APN_0541/5/2616:2624No text annotation
homologous
HL_5TBW_054
NA
HL_5APN_0551/5/2633:2645No text annotation
homologous
HL_5TBW_055
NA
HL_5APN_0561/5/2673:2681No text annotation
homologous
HL_5TBW_056
NA
HL_5APN_0571/5/2693:2700Pseudoknot geometry
homologous
HL_8C3A_058
NA
HL_5APN_0581/5/2724:2732No text annotation
homologous
HL_5TBW_058
NA
HL_5APN_0591/5/2744:2749GNRA
homologous
HL_5TBW_059
NA
HL_5APN_0601/5/2776:2784Pseudoknot geometry
homologous
HL_8C3A_061
NA
HL_5APN_0611/5/2840:2848No text annotation
homologous
HL_5TBW_061
NA
HL_5APN_0621/5/2897:2904No text annotation
homologous
HL_5TBW_062
NA
HL_5APN_0631/5/2920:2926No text annotation
geometric
HL_5TBW_063
NA
HL_5APN_0641/5/2963:2968GNRA
homologous
HL_8C3A_065
NA
HL_5APN_0651/5/3025:3030GNRA
geometric
HL_5J7L_004
HL_37824.7
HL_5APN_0661/5/3068:3073Ribsomal LSU H95
homologous
HL_5TBW_066
NA
HL_5APN_0671/5/3110:3124No text annotation
homologous
HL_5TBW_067
NA
HL_5APN_0681/5/3194:3197No text annotation
homologous
HL_5TBW_068
NA
HL_5APN_0691/5/3240:3247No text annotation
homologous
HL_5TBW_069
NA
HL_5APN_0701/5/3303:3311No text annotation
geometric
HL_5TBW_070
NA
HL_5APN_0711/5/3350:3353Mini UNCG
geometric
HL_5U30_001
HL_48778.2
HL_5APN_0791/7/32:45No text annotation
homologous
HL_8P9A_183
HL_13971.1
HL_5APN_0721/7/36:41No text annotation
homologous
HL_5TBW_185
NA
HL_5APN_0731/7/88:93GNRA
homologous
HL_5TBW_186
NA
HL_5APN_0801/8/47:56Pseudoknot with intercalation
homologous
HL_8C3A_229
NA
HL_5APN_0741/8/69:89No text annotation
homologous
HL_8C3A_230
NA
HL_5APN_0751/8/108:114No text annotation
homologous
HL_5TBW_075
NA
HL_5APN_0761/8/124:129No text annotation
homologous
HL_5TBW_076
NA

Problematic loops

#loop idProblemSequence
HL_5APN_077No text annotation
HL_5APN_015No text annotation
HL_5APN_020No text annotation
HL_5APN_023No text annotation
HL_5APN_031No text annotation
HL_5APN_044No text annotation
HL_5APN_046No text annotation
HL_5APN_051No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_5APN_0021/5/7:8,
1/8/150:152		Single bulged C
homologous
IL_8C3A_002
NA
IL_5APN_0031/5/13:15,
1/8/144:145		Single bulged U
homologous
IL_8C3A_003
NA
IL_5APN_0041/5/27:28,
1/5/56:58		Single stack bend
homologous
IL_5TBW_004
NA
IL_5APN_0051/5/31:38,
1/5/45:53		tSH-tHW-tHH-tHS
homologous
IL_5TBW_005
NA
IL_5APN_0061/5/82:89,
1/5/97:103		8x7 Sarcin-Ricin; G-bulge
homologous
IL_5TBW_006
NA
IL_5APN_0071/5/123:124,
1/5/144:149		No text annotation
homologous
IL_8C3A_007
NA
IL_5APN_0081/5/125:127,
1/5/141:143		Isolated non-canonical cWW pair
homologous
IL_8C3A_008
NA
IL_5APN_0091/5/163:165,
1/5/257:258		Single stack bend
homologous
IL_5TBW_009
NA
IL_5APN_1581/5/169:170,
1/5/248:253		No text annotation
IL_5APN_0111/5/177:178,
1/5/238:241		Major groove platform
geometric
IL_7A0S_073
IL_48076.6
IL_5APN_0121/5/189:191,
1/5/204:205		Single bulged U
homologous
IL_8C3A_013
NA
IL_5APN_0131/5/337:339,
1/8/25:26		Single bulged A
homologous
IL_5TBW_013
NA
IL_5APN_1711/5/404:410,
1/8/13:19		No text annotation
homologous
IL_8P9A_244
IL_04021.2
IL_5APN_0151/5/429:431,
1/5/628:630		Isolated non-canonical cWW pair
homologous
IL_5TBW_016
NA
IL_5APN_0171/5/512:513,
1/5/577:579		Single bulged A
homologous
IL_5TBW_018
NA
IL_5APN_0181/5/517:525,
1/5/567:573		No text annotation
homologous
IL_5TBW_019
NA
IL_5APN_0191/5/531:538,
1/5/553:561		No text annotation
homologous
IL_5TBW_020
NA
IL_5APN_0211/5/668:670,
1/5/792:794		Isolated non-canonical cWW pair
homologous
IL_8C3A_023
NA
IL_5APN_0221/5/680:684,
1/5/696:700		No text annotation
homologous
IL_5TBW_022
NA
IL_5APN_0231/5/725:728,
1/5/741:745		UAA/GAN
homologous
IL_5TBW_023
NA
IL_5APN_0241/5/752:753,
1/5/779:781		Single bulged A
homologous
IL_5TBW_024
NA
IL_5APN_0251/5/755:756,
1/5/775:777		Single bulged U
homologous
IL_5TBW_025
NA
IL_5APN_0261/5/758:763,
1/5/768:773		No text annotation
homologous
IL_5TBW_026
NA
IL_5APN_0271/5/803:805,
1/5/938:940		Isolated non-canonical cWW pair
geometric
IL_7A0S_014
IL_87907.2
IL_5APN_0281/5/805:809,
1/5/931:938		tHW-tHW cross-strand stack
homologous
IL_5TBW_028
NA
IL_5APN_0291/5/828:829,
1/5/895:897		Single bulged A
homologous
IL_8C3A_031
NA
IL_5APN_0301/5/833:834,
1/5/859:861		Single bulged G
homologous
IL_8C3A_032
NA
IL_5APN_0311/5/834:838,
1/5/855:859		Triple sheared
geometric
IL_5TBW_030
NA
IL_5APN_0321/5/869:872,
1/5/888:890		Major groove platform with extra cWW
homologous
IL_5TBW_031
NA
IL_5APN_0331/5/873:875,
1/5/886:887		Single bulged U
geometric
IL_5TBW_032
NA
IL_5APN_0341/5/907:909,
1/5/919:923		Multiple bulged bases
geometric
IL_5J7L_265
IL_06549.2
IL_5APN_0361/5/954:956,
1/5/965:967		Isolated non-canonical cWW pair
homologous
IL_5TBW_034
NA
IL_5APN_0371/5/969:970,
1/5/1111:1113		Single stack bend
homologous
IL_5TBW_035
NA
IL_5APN_0381/5/977:982,
1/5/1101:1104		No text annotation
IL_5APN_0391/5/983:985,
1/5/1099:1100		Single bulged G
homologous
IL_8C3A_040
NA
IL_5APN_0401/5/991:997,
1/5/1052:1058		7x7 Sarcin-Ricin with intercalated A; G-bulge
geometric
IL_5TBW_038
NA
IL_5APN_0411/5/997:998,
1/5/1050:1052		Minor groove platform
homologous
IL_5TBW_039
NA
IL_5APN_0421/5/999:1004,
1/5/1046:1049		C-loop with bulged stacked A's
homologous
IL_5TBW_040
NA
IL_5APN_0431/5/1006:1009,
1/5/1041:1044		Tandem non-canonical cWW pairs
geometric
IL_5TBW_041
NA
IL_5APN_0441/5/1009:1011,
1/5/1039:1041		Isolated non-canonical cWW pair
homologous
IL_5TBW_042
NA
IL_5APN_0451/5/1069:1071,
1/5/1087:1089		Isolated non-canonical cWW pair
homologous
IL_8C3A_047
NA
IL_5APN_0461/5/1074:1076,
1/5/1083:1084		Single bulged A
geometric
IL_5TBW_045
NA
IL_5APN_0471/5/1120:1122,
1/5/1136:1138		Isolated non-canonical cWW pair
homologous
IL_5TBW_046
NA
IL_5APN_0481/5/1167:1171,
1/5/1328:1332		UAA/GAN
homologous
IL_5TBW_048
NA
IL_5APN_0491/5/1173:1180,
1/5/1325:1326		SSU/LSU pseudoknot
homologous
IL_5TBW_049
NA
IL_5APN_0501/5/1180:1182,
1/5/1324:1325		Single bulged U
geometric
IL_5J7L_279
IL_89505.4
IL_5APN_0511/5/1187:1194,
1/5/1314:1319		No text annotation
homologous
IL_5TBW_051
NA
IL_5APN_1591/5/1187:1205,
1/5/1299:1319		No text annotation
IL_5APN_0521/5/1194:1205,
1/5/1299:1314		No text annotation
geometric
IL_5TBW_052
NA
IL_5APN_0531/5/1207:1209,
1/5/1296:1297		Single bulged U
homologous
IL_5TBW_053
NA
IL_5APN_0541/5/1218:1226,
1/5/1283:1287		Kink-turn
homologous
IL_8C3A_057
NA
IL_5APN_0551/5/1234:1238,
1/5/1250:1254		No text annotation
homologous
IL_8C3A_058
NA
IL_5APN_0561/5/1262:1266,
1/5/1275:1277		Major groove platform with extra cWW
homologous
IL_8C3A_059
NA
IL_5APN_0571/5/1376:1378,
1/5/1428:1431		No text annotation
homologous
IL_8C3A_061
NA
IL_5APN_0581/5/1385:1387,
1/5/1420:1421		Single bulged A
homologous
IL_8C3A_062
NA
IL_5APN_0591/5/1388:1395,
1/5/1415:1419		Kink-turn
homologous
IL_5TBW_059
NA
IL_5APN_0601/5/1398:1400,
1/5/1411:1412		Single bulged A
homologous
IL_5TBW_060
NA
IL_5APN_0611/5/1444:1450,
1/5/2354:2359		7x6 Sarcin-Ricin; G-bulge
homologous
IL_5TBW_061
NA
IL_5APN_0631/5/1492:1495,
1/5/1835:1836		Major groove platform; stack outside cWW
geometric
IL_4V9F_050
IL_50694.7
IL_5APN_1601/5/1501:1505,
1/5/1513:1515		C-loop
homologous
IL_8C3A_482
NA
IL_5APN_0651/5/1532:1536,
1/5/1585:1590		UAA/GAN
homologous
IL_5TBW_063
NA
IL_5APN_0661/5/1565:1566,
1/5/1572:1574		Minor groove platform
geometric
IL_2QWY_009
IL_51454.3
IL_5APN_0681/5/1618:1621,
1/5/1824:1826		No text annotation
homologous
IL_8C3A_070
NA
IL_5APN_0691/5/1623:1625,
1/5/1818:1822		No text annotation
homologous
IL_8C3A_071
NA
IL_5APN_0701/5/1627:1631,
1/5/1811:1816		No text annotation
homologous
IL_5TBW_066
NA
IL_5APN_0711/5/1645:1649,
1/5/1806:1810		Triple sheared
homologous
IL_8C3A_073
NA
IL_5APN_0731/5/1661:1663,
1/5/1786:1788		Isolated non-canonical cWW pair
homologous
IL_5TBW_068
NA
IL_5APN_0741/5/1669:1670,
1/5/1778:1780		Single bulged C
homologous
IL_5TBW_069
NA
IL_5APN_0751/5/1670:1671,
1/5/1776:1778		Single stack bend
geometric
IL_5TBW_070
NA
IL_5APN_0761/5/1694:1698,
1/5/1747:1752		No text annotation
homologous
IL_5TBW_071
NA
IL_5APN_0771/5/1702:1707,
1/5/1737:1743		No text annotation
homologous
IL_8C3A_078
NA
IL_5APN_0781/5/1711:1717,
1/5/1727:1733		Kink-turn
homologous
IL_5TBW_073
NA
IL_5APN_0791/5/1883:1889,
1/5/2346:2349		No text annotation
homologous
IL_5TBW_074
NA
IL_5APN_0801/5/1895:1897,
1/5/2338:2340		Isolated tWW turn
homologous
IL_5TBW_075
NA
IL_5APN_0811/5/1898:1901,
1/5/2336:2337		Major groove platform; stack outside cWW
geometric
IL_7RQB_066
NA
IL_5APN_1611/5/1898:1906,
1/5/2333:2337		No text annotation
homologous
IL_8C3A_484
NA
IL_5APN_0821/5/1901:1906,
1/5/2333:2336		No text annotation
homologous
IL_8C3A_083
NA
IL_5APN_0831/5/1918:1923,
1/5/1928:1934		No text annotation
homologous
IL_8C3A_084
NA
IL_5APN_0841/5/1940:1942,
1/5/2106:2108		Isolated non-canonical cWW pair
homologous
IL_8C3A_085
NA
IL_5APN_0851/5/1947:1948,
1/5/2098:2101		No text annotation
homologous
IL_8C3A_086
NA
IL_5APN_1621/5/1952:1986,
1/5/2025:2094		No text annotation
IL_5APN_0861/5/2128:2129,
1/5/2323:2325		Single bulged A
homologous
IL_8C3A_087
NA
IL_5APN_0871/5/2156:2161,
1/5/2173:2180		Kink-turn related
homologous
IL_5TBW_083
NA
IL_5APN_0881/5/2196:2199,
1/5/2245:2246		No text annotation
homologous
IL_8C3A_089
NA
IL_5APN_0891/5/2200:2201,
1/5/2241:2244		Multiple bulged bases
homologous
IL_8C3A_090
NA
IL_5APN_0901/5/2204:2206,
1/5/2237:2238		Single bulged U
homologous
IL_5TBW_086
NA
IL_5APN_1631/5/2206:2210,
1/5/2235:2237		No text annotation
homologous
IL_8P9A_315
IL_36516.3
IL_5APN_1641/5/2210:2217,
1/5/2228:2235		No text annotation
IL_5APN_0911/5/2276:2278,
1/5/2307:2310		Intercalated cWW
geometric
IL_4WF9_047
IL_31737.3
IL_5APN_0921/5/2278:2288,
1/5/2304:2307		No text annotation
IL_5APN_1651/5/2391:2394,
1/5/2986:2988		No text annotation
homologous
IL_8C3A_096
NA
IL_5APN_0951/5/2396:2398,
1/5/2981:2984		Major groove platform with intercalation
homologous
IL_5TBW_092
NA
IL_5APN_0961/5/2409:2411,
1/5/2811:2812		Single bulged U
homologous
IL_5TBW_093
NA
IL_5APN_0971/5/2411:2412,
1/5/2809:2811		Multiple bulged bases
geometric
IL_1R3E_001
IL_84476.1
IL_5APN_1721/5/2411:2413,
1/5/2807:2811		No text annotation
IL_5APN_0981/5/2412:2414,
1/5/2806:2809		Isolated cWS basepair
geometric
IL_7A0S_041
IL_42997.3
IL_5APN_1001/5/2423:2425,
1/5/2604:2607		No text annotation
homologous
IL_8C3A_100
NA
IL_5APN_1031/5/2520:2526,
1/5/2584:2587		No text annotation
geometric
IL_5TBW_096
NA
IL_5APN_1051/5/2614:2615,
1/5/2625:2627		Single bulged A
homologous
IL_8C3A_107
NA
IL_5APN_1061/5/2666:2668,
1/5/2686:2690		Isolated tHS basepair with bulges
homologous
IL_5TBW_099
NA
IL_5APN_1731/5/2714:2716,
1/5/2740:2741		Single bulged A
geometric
IL_8P9A_242
IL_31462.6
IL_5APN_1081/5/2717:2719,
1/5/2738:2739		Single stack bend
geometric
IL_7A0S_054
IL_26793.1
IL_5APN_1671/5/2718:2721,
1/5/2735:2738		Tandem non-canonical cWW pairs
homologous
IL_8C3A_109
NA
IL_5APN_1091/5/2719:2721,
1/5/2735:2738		No text annotation
geometric
IL_4V9F_053
IL_09990.4
IL_5APN_1111/5/2770:2773,
1/5/2787:2788		Single stack bend with bulge
homologous
IL_8C3A_110
NA
IL_5APN_1121/5/2823:2824,
1/5/2865:2867		Major groove platform
geometric
IL_5TBW_102
NA
IL_5APN_1131/5/2824:2826,
1/5/2863:2865		Isolated non-canonical cWW pair
geometric
IL_5TBW_103
NA
IL_5APN_1141/5/2826:2828,
1/5/2862:2863		Major groove platform
geometric
IL_5TBW_104
NA
IL_5APN_1151/5/2828:2830,
1/5/2858:2862		Major groove minor groove platform with extra cWW
homologous
IL_5TBW_105
NA
IL_5APN_1161/5/2835:2839,
1/5/2849:2853		No text annotation
homologous
IL_8C3A_114
NA
IL_5APN_1171/5/2876:2877,
1/5/2949:2951		Major groove platform
homologous
IL_5TBW_107
NA
IL_5APN_1181/5/2879:2881,
1/5/2943:2947		Isolated non-canonical cWW with bulges
geometric
IL_5TBW_108
NA
IL_5APN_1191/5/2881:2882,
1/5/2940:2943		Multiple bulged bases
homologous
IL_5TBW_109
NA
IL_5APN_1201/5/2889:2891,
1/5/2912:2914		Isolated non-canonical cWW pair
homologous
IL_8C3A_118
NA
IL_5APN_1681/5/2889:2892,
1/5/2909:2914		No text annotation
homologous
IL_8P9A_338
IL_07469.2
IL_5APN_1211/5/2891:2892,
1/5/2909:2912		Major groove platform with intercalation
geometric
IL_5TBW_111
NA
IL_5APN_1221/5/2918:2920,
1/5/2926:2928		Isolated non-canonical cWW pair
homologous
IL_5TBW_112
NA
IL_5APN_1231/5/2960:2961,
1/5/2970:2972		Single bulged A
homologous
IL_5TBW_113
NA
IL_5APN_1241/5/3004:3007,
1/5/3139:3144		Double sheared
homologous
IL_8C3A_123
NA
IL_5APN_1251/5/3012:3014,
1/5/3040:3042		Isolated non-canonical cWW pair
homologous
IL_8C3A_124
NA
IL_5APN_1261/5/3018:3025,
1/5/3030:3036		8x7 Sarcin-Ricin; G-bulge
homologous
IL_5TBW_116
NA
IL_5APN_1271/5/3047:3051,
1/5/3091:3094		Major groove minor groove platform with tHH
homologous
IL_5TBW_117
NA
IL_5APN_1281/5/3054:3059,
1/5/3084:3088		UAA/GAN related
homologous
IL_5TBW_118
NA
IL_5APN_1291/5/3063:3064,
1/5/3077:3080		Multiple bulged bases
homologous
IL_5TBW_119
NA
IL_5APN_1301/5/3103:3107,
1/5/3127:3131		UAA/GAN
homologous
IL_5TBW_120
NA
IL_5APN_1321/5/3164:3166,
1/5/3284:3286		Isolated non-canonical cWW pair
homologous
IL_8C3A_130
NA
IL_5APN_1331/5/3168:3170,
1/5/3280:3282		Isolated non-canonical cWW pair
homologous
IL_5TBW_122
NA
IL_5APN_1341/5/3177:3179,
1/5/3210:3211		Single bulged A
geometric
IL_5TBW_123
NA
IL_5APN_1351/5/3179:3188,
1/5/3204:3210		No text annotation
homologous
IL_5TBW_124
NA
IL_5APN_1361/5/3193:3194,
1/5/3197:3199		Single bulged U
geometric
IL_5TBW_125
NA
IL_5APN_1371/5/3225:3229,
1/5/3258:3260		No text annotation
homologous
IL_8C3A_133
NA
IL_5APN_1381/5/3233:3235,
1/5/3252:3254		Isolated non-canonical cWW pair
geometric
IL_5TBW_042
NA
IL_5APN_1391/5/3235:3238,
1/5/3249:3252		Tandem non-canonical cWW pairs
homologous
IL_5TBW_128
NA
IL_5APN_1401/5/3300:3303,
1/5/3311:3314		Tandem non-canonical cWW pairs
geometric
IL_5TBW_129
NA
IL_5APN_1411/5/3318:3320,
1/5/3387:3388		Single bulged U
geometric
IL_5TBW_125
NA
IL_5APN_1421/5/3324:3325,
1/5/3381:3383		Single bulged U
homologous
IL_5TBW_131
NA
IL_5APN_1431/5/3328:3330,
1/5/3373:3378		No text annotation
homologous
IL_8C3A_138
NA
IL_5APN_1441/5/3332:3337,
1/5/3367:3371		No text annotation
homologous
IL_5TBW_133
NA
IL_5APN_1451/5/3340:3342,
1/5/3363:3364		Single bulged U
geometric
IL_6UFH_004
IL_89505.4
IL_5APN_1461/5/3342:3345,
1/5/3360:3363		Double sheared; A in syn
homologous
IL_8C3A_141
NA
IL_5APN_1471/5/3349:3350,
1/5/3353:3356		Multiple bulged bases
homologous
IL_8C3A_142
NA
IL_5APN_1481/7/15:16,
1/7/63:65		Single bulged A
homologous
IL_5TBW_372
NA
IL_5APN_1491/7/21:27,
1/7/53:58		Minor groove platform related
homologous
IL_5TBW_373
NA
IL_5APN_1501/7/28:29,
1/7/49:52		Minor groove platform
geometric
IL_5TBW_374
NA
IL_5APN_1511/7/29:30,
1/7/47:49		Single stack bend
homologous
IL_5TBW_375
NA
IL_5APN_1521/7/32:36,
1/7/41:45		Symmetric double minor groove platform
geometric
IL_5TBW_376
NA
IL_5APN_1531/7/72:80,
1/7/100:106		8x7 Sarcin-Ricin; G-bulge
homologous
IL_5TBW_377
NA
IL_5APN_1541/7/84:87,
1/7/94:96		Isolated non-canonical cWW pair
homologous
IL_5TBW_378
NA
IL_5APN_1551/8/44:64,
1/8/96:100		No text annotation
geometric
IL_5TBW_144
NA
IL_5APN_1561/8/64:66,
1/8/93:96		Isolated non-canonical cWW pair
geometric
IL_5TBW_145
NA
IL_5APN_1571/8/68:69,
1/8/89:91		Single bulged U
geometric
IL_5TBW_146
NA

Problematic loops

#loop idProblemSequence
IL_5APN_001No text annotation
IL_5APN_010No text annotation
IL_5APN_014No text annotation
IL_5APN_016No text annotation
IL_5APN_020Isolated non-canonical cWW pair
IL_5APN_035Isolated non-canonical cWW pair
IL_5APN_062Isolated cWH basepair
IL_5APN_064No text annotation
IL_5APN_067No text annotation
IL_5APN_072Isolated non-canonical cWW pair
IL_5APN_093Isolated cWS basepair
IL_5APN_094Major groove platform with intercalation
IL_5APN_166No text annotation
IL_5APN_099Isolated non-canonical cWW contact
IL_5APN_101Isolated non-canonical cWW pair
IL_5APN_102Isolated non-canonical cWW pair
IL_5APN_104Isolated cWH basepair
IL_5APN_107No text annotation
IL_5APN_110Isolated non-canonical cWW pair
IL_5APN_169No text annotation
IL_5APN_170Isolated non-canonical cWW pair
IL_5APN_131Isolated non-canonical cWW pair

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_5APN_0011/5/113:123,
1/5/149:158,
1/5/263:267		No text annotation
homologous
J3_8P9A_042
J3_19664.1
J3_5APN_0121/5/113:124,
1/5/144:158,
1/5/263:267		No text annotation
J3_5APN_0131/5/340:356,
1/5/363:368,
1/8/21:24		No text annotation
homologous
J3_8P9A_045
J3_30040.2
J3_5APN_0141/5/369:379,
1/5/390:404,
1/8/19:20		No text annotation
homologous
J3_8P9A_047
J3_92134.2
J3_5APN_0151/5/502:503,
1/5/588:597,
1/5/606:611		No text annotation
homologous
J3_8P9A_048
J3_83726.1
J3_5APN_0261/5/814:820,
1/5/905:907,
1/5/923:926		No text annotation
homologous
J3_8P9A_049
J3_64189.2
J3_5APN_0031/5/829:831,
1/5/863:867,
1/5/892:895		No text annotation
homologous
J3_8C3A_004
NA
J3_5APN_0171/5/986:987,
1/5/1062:1066,
1/5/1092:1098		No text annotation
homologous
J3_8P9A_051
J3_09667.1
J3_5APN_0041/5/1230:1232,
1/5/1256:1262,
1/5/1277:1279		No text annotation
homologous
J3_8C3A_005
NA
J3_5APN_0271/5/1479:1485,
1/5/1857:1859,
1/5/1871:1874		No text annotation
homologous
J3_8CRE_013
J3_19545.2
J3_5APN_0061/5/1488:1491,
1/5/1837:1843,
1/5/1852:1854		No text annotation
homologous
J3_5TBW_009
NA
J3_5APN_0191/5/1526:1531,
1/5/1591:1595,
1/5/1612:1613		No text annotation
homologous
J3_8P9A_055
J3_31965.2
J3_5APN_0201/5/1537:1542,
1/5/1551:1560,
1/5/1579:1584		No text annotation
J3_5APN_0211/5/1631:1632,
1/5/1641:1645,
1/5/1810:1811		No text annotation
homologous
J3_8C3A_054
NA
J3_5APN_0221/5/1654:1658,
1/5/1791:1792,
1/5/1796:1801		No text annotation
homologous
J3_8P9A_058
J3_12393.2
J3_5APN_0071/5/2432:2435,
1/5/2512:2517,
1/5/2590:2597		No text annotation
homologous
J3_5TBW_012
NA
J3_5APN_0081/5/2529:2532,
1/5/2547:2563,
1/5/2578:2581		No text annotation
homologous
J3_8P9A_060
J3_28639.1
J3_5APN_0281/5/2664:2666,
1/5/2690:2692,
1/5/2701:2706		No text annotation
homologous
J3_8P9A_062
J3_61124.2
J3_5APN_0101/5/2886:2889,
1/5/2914:2916,
1/5/2930:2936		No text annotation
homologous
J3_8C3A_011
NA
J3_5APN_0231/5/3171:3176,
1/5/3212:3220,
1/5/3265:3279		No text annotation
homologous
J3_8P9A_064
J3_03190.1
J3_5APN_0111/5/3298:3300,
1/5/3314:3318,
1/5/3388:3390		No text annotation
homologous
J3_5TBW_015
NA
J3_5APN_0241/7/9:14,
1/7/66:67,
1/7/111:112		No text annotation
homologous
J3_8P9A_066
J3_12003.2
J3_5APN_0251/8/44:45,
1/8/58:66,
1/8/93:100		No text annotation
J4_5APN_0011/5/112:113,
1/5/267:272,
1/5/293:299,
1/5/316:319		No text annotation
homologous
J4_8P9A_012
J4_45801.6
J4_5APN_0021/5/185:189,
1/5/205:208,
1/5/212:214,
1/5/226:231		No text annotation
homologous
J4_8P9A_013
J4_12410.1
J4_5APN_0031/5/1451:1457,
1/5/1475:1476,
1/5/1877:1880,
1/5/2352:2353		No text annotation
homologous
J4_8P9A_014
J4_87855.1
J4_5APN_0041/5/1492:1496,
1/5/1520:1525,
1/5/1614:1615,
1/5/1829:1836		No text annotation
J4_5APN_0051/5/1495:1496,
1/5/1520:1525,
1/5/1614:1615,
1/5/1829:1835		No text annotation
J4_5APN_0061/5/1674:1675,
1/5/1693:1694,
1/5/1752:1753,
1/5/1772:1773		No text annotation
homologous
J4_8P9A_016
J4_24280.2
J4_5APN_0071/5/2130:2134,
1/5/2146:2150,
1/5/2186:2191,
1/5/2317:2322		No text annotation
homologous
J4_8C3A_006
NA
J4_5APN_0081/5/2192:2194,
1/5/2248:2249,
1/5/2267:2276,
1/5/2310:2316		No text annotation
J4_5APN_0091/5/2654:2658,
1/5/2712:2714,
1/5/2741:2742,
1/5/2751:2753		No text annotation
J4_5APN_0121/5/2654:2658,
1/5/2712:2716,
1/5/2740:2742,
1/5/2751:2753		No text annotation
homologous
J4_8CRE_008
J4_04930.6
J4_5APN_0111/5/3010:3012,
1/5/3042:3043,
1/5/3098:3100,
1/5/3134:3136		No text annotation
homologous
J4_8P9A_020
J4_65356.1
J5_5APN_0011/5/20:22,
1/8/35:42,
1/8/102:107,
1/8/115:116,
1/8/137:139		No text annotation
homologous
J5_8C3A_001
NA
J5_5APN_0021/5/658:663,
1/5/799:802,
1/5/941:944,
1/5/1375:1376,
1/5/1431:1437		No text annotation
homologous
J5_8P9A_011
J5_63811.1
J5_5APN_0031/5/675:678,
1/5/702:706,
1/5/713:721,
1/5/749:751,
1/5/782:787		No text annotation
homologous
J5_8P9A_012
J5_23272.1
J5_5APN_0041/5/1906:1914,
1/5/1938:1939,
1/5/2109:2110,
1/5/2114:2122,
1/5/2331:2333		No text annotation
homologous
J5_8P9A_013
J5_62523.6
J5_5APN_0051/5/2399:2406,
1/5/2815:2823,
1/5/2867:2875,
1/5/2952:2957,
1/5/2975:2980		No text annotation
J6_5APN_0011/5/22:27,
1/5/58:68,
1/5/75:79,
1/5/106:110,
1/5/321:331,
1/8/32:35		No text annotation
J6_5APN_0021/5/2416:2419,
1/5/2611:2614,
1/5/2627:2628,
1/5/2650:2653,
1/5/2754:2765,
1/5/2793:2804		No text annotation
J7_5APN_0021/5/949:954,
1/5/967:968,
1/5/1114:1117,
1/5/1141:1146,
1/5/1157:1161,
1/5/1338:1339,
1/5/1365:1370		No text annotation

Problematic loops

#loop idProblemSequence
J3_5APN_002No text annotation
J3_5APN_016No text annotation
J3_5APN_005No text annotation
J3_5APN_018No text annotation
J3_5APN_009No text annotation
J4_5APN_010No text annotation
J7_5APN_001No text annotation

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