HL_5APN_044

3D structure

PDB id

5APN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and N-terminally tagged Rei1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.91 Å

Loop

Sequence

GG(Y5P)(Y5P)(Y5P)(Y5P)(Y5P)(Y5P)(Y5P)(Y5P)(Y5P)(Y5P)(P5P)(P5P)(P5P)(P5P)(P5P)(P5P)(P5P)(P5P)(P5P)(P5P)AC

Length

24 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5APN|1|5|G|1952
5APN|1|5|G|1953
5APN|1|5|Y5P|1986
5APN|1|5|Y5P|1987
5APN|1|5|Y5P|1988
5APN|1|5|Y5P|1989
5APN|1|5|Y5P|1990
5APN|1|5|Y5P|1991
5APN|1|5|Y5P|1992
5APN|1|5|Y5P|1993
5APN|1|5|Y5P|1994
5APN|1|5|Y5P|1995
5APN|1|5|P5P|2016
5APN|1|5|P5P|2017
5APN|1|5|P5P|2018
5APN|1|5|P5P|2019
5APN|1|5|P5P|2020
5APN|1|5|P5P|2021
5APN|1|5|P5P|2022
5APN|1|5|P5P|2023
5APN|1|5|P5P|2024
5APN|1|5|P5P|2025
5APN|1|5|A|2093
5APN|1|5|C|2094

Current chains

Chain 5

25S rRNA

Nearby chains

Chain R

60S ribosomal protein L19-A

Chain x

Probable metalloprotease ARX1