HL_5APN_054

3D structure

PDB id

5APN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and N-terminally tagged Rei1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.91 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

5APN|1|5|G|2618

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5APN_054 not in the Motif Atlas

Homologous match to HL_5TBW_054

Geometric discrepancy: 0.124

The information below is about HL_5TBW_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47383.2

Basepair signature

cWW-F-F-cWW-F-F

Number of instances in this motif group

11

Unit IDs

5APN|1|5|C|2616
5APN|1|5|U|2617
5APN|1|5|G|2618
5APN|1|5|G|2619
5APN|1|5|G|2620
5APN|1|5|G|2621
5APN|1|5|C|2622
5APN|1|5|G|2623
5APN|1|5|G|2624

Current chains

Chain 5

25S rRNA

Nearby chains

Chain I

60S ribosomal protein L10

Chain b

60S ribosomal protein L29