HL_5APN_070

3D structure

PDB id

5APN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and N-terminally tagged Rei1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.91 Å

Loop

Sequence

GUAUACGAC

Length

9 nucleotides

Bulged bases

5APN|1|5|U|3304

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5APN_070 not in the Motif Atlas

Geometric match to HL_5TBW_070

Geometric discrepancy: 0.1362

The information below is about HL_5TBW_070

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.4

Basepair signature

cWW-cSW-F-F-F-cWW

Number of instances in this motif group

9

Unit IDs

5APN|1|5|G|3303
5APN|1|5|U|3304
5APN|1|5|A|3305
5APN|1|5|U|3306
5APN|1|5|A|3307
5APN|1|5|C|3308
5APN|1|5|G|3309
5APN|1|5|A|3310
5APN|1|5|C|3311

Current chains

Chain 5

25S rRNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain P

60S ribosomal protein L17-A

Chain d

60S ribosomal protein L31-A